Transcript Information: R_Transcript_100049.p1


Annotated TAIR IDAT1G15360.1
Annotated Gene NameIntegrase-type DNA-binding superfamily protein
Annotated Gene Symbol(s)SHN1, WIN1
Annotation TypeOrtholog
Chromosome Positionchr1:5283609-5284506 | Forward length=199
E-Value9.4E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.84616375286776
Replicate 21.1123867770224
Replicate 30.75850124490571
Condition 2: 8 Hour
Replicate 12.4323706901237
Replicate 24.2944739959893
Replicate 33.0052335464217
Condition 3: 24 Hour
Replicate 11.8244615015394
Replicate 24.0897168803719
Replicate 32.7540820466957


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_100049.p1 GENE.R_Transcript_100049~~R_Transcript_100049.p1 ORF type:5prime_partial len:151 (+),score=27.61 R_Transcript_100049:1-453(+)
AAAACGCGAATATGGCTGGGAACATTCGAAACGGCTGAAGATGCAGCTAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGACCTAGAGCTCGGACCAACTTTCCATACAATGGGATTCAATCACCTTCTTCAAAACTTCTTTCTTCAACTCTTGCTTCAAAATTACACAAATGCCATCTTCAAGCCACCCTTCAACTAACCAAAAGAAATGAAGTCAATAATGCTAGTGCTAAGAACAACAACAATAATAACAATAATGTTACTAGGAGCATAAATGTTGTTGATCATGGAGAAAGGGCGGTTGAAACACCGGAGATGAGTTGGAGTAGGGAGGAACAAAGCCCTCCATTATTGTTTGAAGATGATCATACACATATTGAACAGATGATCGAGGAGTTGCTTGATTATGGCTATTTTGAACTTTGCAATACTGAAAAACACAATAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_100049.p1 GENE.R_Transcript_100049~~R_Transcript_100049.p1 ORF type:5prime_partial len:151 (+),score=27.61 R_Transcript_100049:1-453(+)
KTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNGIQSPSSKLLSSTLASKLHKCHLQATLQLTKRNEVNNASAKNNNNNNNNVTRSINVVDHGERAVETPEMSWSREEQSPPLLFEDDHTHIEQMIEELLDYGYFELCNTEKHNS*

Click here to download the sequence:
Link to NCBI Protein BLAST