Transcript Information: R_Transcript_100053.p1


Annotated TAIR IDAT1G15360.1
Annotated Gene NameIntegrase-type DNA-binding superfamily protein
Annotated Gene Symbol(s)SHN1, WIN1
Annotation TypeOrtholog
Chromosome Positionchr1:5283609-5284506 | Forward length=199
E-Value1.8E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.881376754739
Replicate 28.9294610965865
Replicate 35.3975646059899
Condition 2: 8 Hour
Replicate 12.3922971500182
Replicate 23.9838352705561
Replicate 35.0073408607964
Condition 3: 24 Hour
Replicate 12.2430041544309
Replicate 22.535087228802
Replicate 32.3900367186842


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_100053.p1 GENE.R_Transcript_100053~~R_Transcript_100053.p1 ORF type:5prime_partial len:174 (+),score=31.73 R_Transcript_100053:1-522(+)
AAAACGCGAATATGGCTGGGAACATTCGAAACGGCTGAAGATGCAGCTAGAGCATATGATGAAGCAGCAAGGCTAATGTGTGGACCTAGAGCTCGGACCAACTTTCCATACAATGGGATTCAATCACCTTCTTCAAAACTTCTTTCTTCAACTCTTGCTTCAAAATTACACAAATGCCATCTTCAAGCCACCCTTCAACTAACCAAAAGAAATGAAGTCAATAATGCTAGTGCTAAGAACAACAATAACAACAACAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATGTTACTAGGAGCATAAATGTTGTTGATCATGGAGAAAGGGCGGTCCGAATGGCGGTTGAAACACCGGAGAGTTCACCGGAGATGAGTTGGAGTAGGGAGGAACAAAGCCCTCCATTATTGTTTGAAGATGATCATACACATATTGAACAGATGATCGAGGAGTTGCTTGATTATGGCTATTTTGAACTTTGCAATACTGAAAAACACAATAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_100053.p1 GENE.R_Transcript_100053~~R_Transcript_100053.p1 ORF type:5prime_partial len:174 (+),score=31.73 R_Transcript_100053:1-522(+)
KTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNGIQSPSSKLLSSTLASKLHKCHLQATLQLTKRNEVNNASAKNNNNNNNNNNNNNNNNNNNNNNNVTRSINVVDHGERAVRMAVETPESSPEMSWSREEQSPPLLFEDDHTHIEQMIEELLDYGYFELCNTEKHNS*

Click here to download the sequence:
Link to NCBI Protein BLAST