Transcript Information: R_Transcript_100301.p1


Annotated TAIR IDAT3G53170.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19704600-19706417 | Reverse length=499
E-Value2E-196
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6860348335743
Replicate 21.9977062532012
Replicate 32.4018715149364
Condition 2: 8 Hour
Replicate 11.7116332778657
Replicate 21.4762523933987
Replicate 32.8549135150511
Condition 3: 24 Hour
Replicate 13.7891526492327
Replicate 22.4838932342786
Replicate 33.570033385824


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_100301.p1 GENE.R_Transcript_100301~~R_Transcript_100301.p1 ORF type:complete len:515 (+),score=78.47,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|0.0088,PPR_2|PF13041.2|8.9e-09,PPR_2|PF13041.2|1.1e-08,PPR_2|PF13041.2|2.3e-08,PPR_2|PF13041.2|3.4e-07,PPR_2|PF13041.2|5.8e-12,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|3.6,PPR|PF01535.16|6.5e+02,PPR|PF01535.16|0.26,PPR|PF01535.16|0.0022,PPR|PF01535.16|42,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|5.6,PPR|PF01535.16|6e-06,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|0.017,PPR|PF01535.16|0.00047,PPR|PF01535.16|0.067,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.85,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|6.4e-05,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|0.0088,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|83,PPR_1|PF12854.3|5.4e+03,PPR_1|PF12854.3|6.3e+02,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|0.0005,PPR_1|PF12854.3|18,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|5,PPR_1|PF12854.3|0.0024,ATP13|PF12921.3|0.00053,ATP13|PF12921.3|4.9e+02,ATP13|PF12921.3|3.6e+02,ATP13|PF12921.3|69 R_Transcript_100301:112-1545(+)
ATGGAGGCGGGGTTTGTGGGTTCAACTAATTTAGTGTCTTGTTGGTTATGGGTGAATGAAGAACAAGGAAAGAGAGCAAGACCTAAAAATGTGGTTTGTGATGGTGGTAGAATTCTAGCTAGAGGAGTTTCAGTACTAAAGGGAAATAGAAAGCAGACGAAAAAGGAGCTGTCAAGAATACTGTGGACTGAAGCAGCCATTGATAATATTGAGAGAAAAGCTGAGTCTACCAAGTATAGAAATTTGTGGCCTAAAGCTGTTCTTGAAGCTTTGGATGAGGCTATTCAGCTTTCCAAATGGGAGTCTGCCCTCAAGATATTTGGACTACTCCGCAAACAACATTGGTATAAGCCAAGATGCCAAACATACACTAAGCTTTTAATGATGCTTGGGAAATGTAGGAAAGCAGAACAGGCCACATTGCTTTTTGAGGTGATGCTTGCTGATGGCCTTCGCCCCACTCTTGATGTTTTTACTGCTTTGGTGTGTGCTTATGGCCTTTCTGGCCTCTTTGACCGAGCATTTTCTACCCTTGATGAAATGAAATCTGTGTATGACTGTAAACCTGATGTCCATACGTATTCCATACTCCTTAACTGCTGTGTAAAGCGCCAATGTTTTGATCTTGTCAATCCCATTCTTGCTGACATGTCATATCTGGGTGTACAATGCACTACCATTACATATAACACTGTAATTGATGGTTACAGCAAGGCCGGATTGTTCAAAATGATGGAAAATCTTTTGTCTGATATGATTCAAACTGTTGATTGTCATCCAGATGTTTTCACTTTGAATTCTTTCCTTTGGGCATATGGGACTCGCGGCCAAATTGAAACTATGGAGAGATGGTATCAAGAGTTTCAATTAATGGGGATAACCCCTGATGTTAGGACCTTTAACATCTTAATCAGATCATATGGTAAAGTAGGCATGTATGATAAAATGGAGTCAGTTCTGGACTTCATGAAAAAAAGGTTCTTCTCCCCTACTGTTGTTACTTTCAATACAATTATTGATGTATTTGGACAGGCTGGTAATATACACAAGATGGATGAATATTTCCTGAAAATGAAGCATCAGGGAATGAAACCTAATTCCATCACCTACTGCTCTCTTGTTAGTGCTTATAGTAAGGCCGGGAAATTGTTTCGGGTGGATTCGATTCTTAGGCAAGTTGAAAACTCTGATGTTGTTGTAGATACTCCATTCTTTAATTGTGCTATCAGTGCCTATGGTCAGGCTGGCAATCTAGATAAAATGAGCGAGGCTTTCCTGGAAATGACAGATAAGAACTGCCAGCCCGATCATATAACCTTTGCTACCCTTATACAAGCTTACAATGCCAATGGAATGACAGAAGCTGCTAAAGACATACAGAATAAGATGTTATCCATGCAAAACTGCCCAGGACCTAAGCTGCTTCAATCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_100301.p1 GENE.R_Transcript_100301~~R_Transcript_100301.p1 ORF type:complete len:515 (+),score=78.47,PPR_2|PF13041.2|1.5e+02,PPR_2|PF13041.2|0.0088,PPR_2|PF13041.2|8.9e-09,PPR_2|PF13041.2|1.1e-08,PPR_2|PF13041.2|2.3e-08,PPR_2|PF13041.2|3.4e-07,PPR_2|PF13041.2|5.8e-12,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|3.6,PPR|PF01535.16|6.5e+02,PPR|PF01535.16|0.26,PPR|PF01535.16|0.0022,PPR|PF01535.16|42,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|5.6,PPR|PF01535.16|6e-06,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|0.017,PPR|PF01535.16|0.00047,PPR|PF01535.16|0.067,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.85,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|6.4e-05,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|0.0088,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.033,PPR_3|PF13812.2|83,PPR_1|PF12854.3|5.4e+03,PPR_1|PF12854.3|6.3e+02,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|0.0005,PPR_1|PF12854.3|18,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|0.0028,PPR_1|PF12854.3|5,PPR_1|PF12854.3|0.0024,ATP13|PF12921.3|0.00053,ATP13|PF12921.3|4.9e+02,ATP13|PF12921.3|3.6e+02,ATP13|PF12921.3|69 R_Transcript_100301:112-1545(+)
MEAGFVGSTNLVSCWLWVNEEQGKRARPKNVVCDGGRILARGVSVLKGNRKQTKKELSRILWTEAAIDNIERKAESTKYRNLWPKAVLEALDEAIQLSKWESALKIFGLLRKQHWYKPRCQTYTKLLMMLGKCRKAEQATLLFEVMLADGLRPTLDVFTALVCAYGLSGLFDRAFSTLDEMKSVYDCKPDVHTYSILLNCCVKRQCFDLVNPILADMSYLGVQCTTITYNTVIDGYSKAGLFKMMENLLSDMIQTVDCHPDVFTLNSFLWAYGTRGQIETMERWYQEFQLMGITPDVRTFNILIRSYGKVGMYDKMESVLDFMKKRFFSPTVVTFNTIIDVFGQAGNIHKMDEYFLKMKHQGMKPNSITYCSLVSAYSKAGKLFRVDSILRQVENSDVVVDTPFFNCAISAYGQAGNLDKMSEAFLEMTDKNCQPDHITFATLIQAYNANGMTEAAKDIQNKMLSMQNCPGPKLLQS*

Click here to download the sequence:
Link to NCBI Protein BLAST