Transcript Information: R_Transcript_100552.p1


Annotated TAIR IDAT4G01990.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:871268-872885 | Reverse length=502
E-Value3.9E-127
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3778861864316
Replicate 23.4926147694422
Replicate 33.8547121293332
Condition 2: 8 Hour
Replicate 13.2679394223596
Replicate 24.7143832121648
Replicate 36.1441622022587
Condition 3: 24 Hour
Replicate 17.1049306700825
Replicate 24.6926082745909
Replicate 36.519741821629


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_100552.p1 GENE.R_Transcript_100552~~R_Transcript_100552.p1 ORF type:complete len:517 (+),score=86.34,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|8.4e+03,PPR|PF01535.16|6.7e-05,PPR|PF01535.16|0.0032,PPR|PF01535.16|22,PPR|PF01535.16|1.3,PPR|PF01535.16|0.25,PPR|PF01535.16|0.48,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|3.2e+03,PPR_2|PF13041.2|0.00043,PPR_2|PF13041.2|1.7e-08,PPR_2|PF13041.2|2.2e+02,PPR_2|PF13041.2|37,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|1.4e+04,PPR_3|PF13812.2|9.7,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|0.042,PPR_3|PF13812.2|22,PPR_3|PF13812.2|48,PPR_3|PF13812.2|1.6e+02 R_Transcript_100552:134-1684(+)
ATGATGCATGAATTCCTGATACAAAAAATGAAGATCTTCAACTTGAACATCAGCTCCCGTCTAATCTCCGGCGAGTCTTCACTTCTCCGGCGACATTCAACAGCAACTCCGGCGAGGCCAAGAAAAGAGACATCAGGAAATCCTAACAGAATCGATAAGTATAGTCTTTTCAAGATGATATCATCAGTGGAATCAAGTAGCAAGGTGTCAAGTTTATTGTACCAATTAGCTAGCCAAGGCAAGCAGTTCAACAAGAGTGATCTTGTTTCCTGCGTTAAGACTTTCCGTAAATTTGGCCGCTTTCAACATTGCCTCGAGATCCTGGAATGGATGGAGAAGGGTACTGTGAGCTATTCAGAAGCAGACTATGCATTACGTTTAGGTATCATATGTAATGTTAAGGGTATTGATGAAGCACAGAAGTACTTTGATAGCCTTCCCCCTGCTGTGAAGAACCGTCCTGCTTACGGAGCTCTTCTCAATTGCTATTGTACTCAAAAGATGACAGAGAAAGCGTTGGCTCTATTTGAAAAGATGGATGAGTTGAATTATATATCCAATGCACTGCCCTTCAACAATCTTATGGGTCACTATATGAAAGTAGGCCAGCCAGAGAAGGTCCCTTCTCTTGTGCAAGAGATGAAGAAAAGGAATATCCCACTAAATGACTACTCGTACAGTATCTGGATACAAAGGTATGGATGTCTTAACAATCTTGAAGGGTTAGAGAGAGTTGTAAATGAAGTTCAAGAACATAATGGCATGAAGAATGGATGGAACATATATAGCAGCCTTGCATCAGCATATATCAAGGTTGGCCAGTCTGAGAAAGCCCAAACAGCCTTGAAGAAGCTGGACGAAGTCTTAGATAATTCATACAATCTCGGTTGGGAGGCATATTATTTTCTGATTACCATGTGCGTTGATGATAGTGATTTAGAGTTTCTGACCCAGGCATGGAATAAGTTCAAGTCCAAGTTCAAATCTTGTAACAACTCTAGCTACTTGACTATGCTAAAAGCCTTATCAAAACTAGGCGATATTGAAGGCCTGAAAATGTGCTTCAAGGAGTGGGAGTCGAGCTACCAGAGTTATGATGTCAGGCTACCGGTCGTTGTTATAAGTGCTTACTTGAAGCAGGACATGGTTGAAGAAGCTGAATTACTGCTAAAAGATGCCGCAGAGAGGTCTGGACAAAATATGTACAACGCCCATCTCCCTCTAGCAAACTACTACTTGGACAAACGTCAGATTGATTGGGCCCTGAGGCATTTGGAACTGGCGGTTCATAACAAGAGGCAGTTGCCCTCTGAGAGGATTAATCCATTCTTCGAGTATTTTAAAGAAGAGCGAGATGTCGACGGGGCTGAAGAATTCTGCCAAATTTTAAAGAAAGACCAGTCTCTTGGTTCTGGAGCCTACTTGTGGTTGCTTCAGGTTTATGCAGCTGCTGGGAAAACAGCTCTTGATTTGCGTCAGAGGATAGAGAAAGATGGCGTAGAGATTGGAACCGAGCATGAGGAGTTGCTCATGAAAGTATGCCCTAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_100552.p1 GENE.R_Transcript_100552~~R_Transcript_100552.p1 ORF type:complete len:517 (+),score=86.34,PPR|PF01535.16|2.1e+03,PPR|PF01535.16|8.4e+03,PPR|PF01535.16|6.7e-05,PPR|PF01535.16|0.0032,PPR|PF01535.16|22,PPR|PF01535.16|1.3,PPR|PF01535.16|0.25,PPR|PF01535.16|0.48,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|3.2e+03,PPR_2|PF13041.2|0.00043,PPR_2|PF13041.2|1.7e-08,PPR_2|PF13041.2|2.2e+02,PPR_2|PF13041.2|37,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|1.4e+04,PPR_3|PF13812.2|9.7,PPR_3|PF13812.2|0.26,PPR_3|PF13812.2|0.042,PPR_3|PF13812.2|22,PPR_3|PF13812.2|48,PPR_3|PF13812.2|1.6e+02 R_Transcript_100552:134-1684(+)
MMHEFLIQKMKIFNLNISSRLISGESSLLRRHSTATPARPRKETSGNPNRIDKYSLFKMISSVESSSKVSSLLYQLASQGKQFNKSDLVSCVKTFRKFGRFQHCLEILEWMEKGTVSYSEADYALRLGIICNVKGIDEAQKYFDSLPPAVKNRPAYGALLNCYCTQKMTEKALALFEKMDELNYISNALPFNNLMGHYMKVGQPEKVPSLVQEMKKRNIPLNDYSYSIWIQRYGCLNNLEGLERVVNEVQEHNGMKNGWNIYSSLASAYIKVGQSEKAQTALKKLDEVLDNSYNLGWEAYYFLITMCVDDSDLEFLTQAWNKFKSKFKSCNNSSYLTMLKALSKLGDIEGLKMCFKEWESSYQSYDVRLPVVVISAYLKQDMVEEAELLLKDAAERSGQNMYNAHLPLANYYLDKRQIDWALRHLELAVHNKRQLPSERINPFFEYFKEERDVDGAEEFCQILKKDQSLGSGAYLWLLQVYAAAGKTALDLRQRIEKDGVEIGTEHEELLMKVCPS*

Click here to download the sequence:
Link to NCBI Protein BLAST