Transcript Information: R_Transcript_100962.p1


Annotated TAIR IDAT5G11190.1
Annotated Gene NameIntegrase-type DNA-binding superfamily protein
Annotated Gene Symbol(s)SHN3
Annotation TypeOrtholog
Chromosome Positionchr5:3564976-3566051 | Forward length=189
E-Value1.8E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.19412489488265
Condition 2: 8 Hour
Replicate 10
Replicate 20.37899799730823
Replicate 30.30765441729469
Condition 3: 24 Hour
Replicate 10.38911537674075
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_100962.p1 GENE.R_Transcript_100962~~R_Transcript_100962.p1 ORF type:5prime_partial len:118 (+),score=12.27,AP2|PF00847.16|3.5e-09 R_Transcript_100962:1-354(+)
ATACTCTATCCTACACCATCTAAAAGACACTCCTCTATTTCTCGAATGGTATACTCAAGTAAGAGGTTCAGAGGTGTCAGGCAACGCCAAGGCGTTTGGGTTGCTGAAATTCGTCACCCCATTTTGAAGAGAAGATTATGGATTGGAACATTCAAGACGGTAGAAGCAGCAGCTAGAGCCTACGACGAGGCAGCCATTCTATTGAATGGCCGCAAAGCCAAGACCAATTTTCCGATATTAACCAACGAATCATCAGACTACACACCAACGTTGTCGTCGTCGTCGTCATCATCATCAAATTCTGTGGGGGTATCCCTCCTACTTGGAGGAAGAGACCATTATGCCCCCACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_100962.p1 GENE.R_Transcript_100962~~R_Transcript_100962.p1 ORF type:5prime_partial len:118 (+),score=12.27,AP2|PF00847.16|3.5e-09 R_Transcript_100962:1-354(+)
ILYPTPSKRHSSISRMVYSSKRFRGVRQRQGVWVAEIRHPILKRRLWIGTFKTVEAAARAYDEAAILLNGRKAKTNFPILTNESSDYTPTLSSSSSSSSNSVGVSLLLGGRDHYAPT*

Click here to download the sequence:
Link to NCBI Protein BLAST