Transcript Information: R_Transcript_100963.p2


Annotated TAIR IDAT5G11190.1
Annotated Gene NameIntegrase-type DNA-binding superfamily protein
Annotated Gene Symbol(s)SHN3
Annotation TypeOrtholog
Chromosome Positionchr5:3564976-3566051 | Forward length=189
E-Value3.1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.22534519697184
Replicate 20.2592135853864
Replicate 30.28279922958213
Condition 2: 8 Hour
Replicate 10.90688388693501
Replicate 22.2084821571541
Replicate 34.9300670820804
Condition 3: 24 Hour
Replicate 13.117726907466
Replicate 22.4505843211753
Replicate 33.2426229165774


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_100963.p2 GENE.R_Transcript_100963~~R_Transcript_100963.p2 ORF type:5prime_partial len:81 (+),score=5.20,AP2|PF00847.16|3.7e-09 R_Transcript_100963:3-245(+)
CAAAATCTCCCTTTGCTCAAACTAGCCCCAAATATATTTACTCTCTATCCTATCCTACACTATCTAAAAGACACTATTTCTCAAATGGTATACTCGAGAAAGAGGTTCAGAGGTGTCAGGCAACGCCAAGGCGTTTGGGTTGCTGAAATTCGTCACCCCATTTTGAAGAGAAGATTATGGATTGGAACATTCAAGACGGTAGAAGCAGCAGCTAGAGCCTATGACGAGGCGGCCATTCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_100963.p2 GENE.R_Transcript_100963~~R_Transcript_100963.p2 ORF type:5prime_partial len:81 (+),score=5.20,AP2|PF00847.16|3.7e-09 R_Transcript_100963:3-245(+)
QNLPLLKLAPNIFTLYPILHYLKDTISQMVYSRKRFRGVRQRQGVWVAEIRHPILKRRLWIGTFKTVEAAARAYDEAAIQ*

Click here to download the sequence:
Link to NCBI Protein BLAST