Transcript Information: R_Transcript_100967.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value7E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.2726641303957
Replicate 27.7095790591094
Replicate 37.0688760550627
Condition 2: 8 Hour
Replicate 16.4084099666618
Replicate 26.5510396019098
Replicate 38.0831391043911
Condition 3: 24 Hour
Replicate 17.1743147586575
Replicate 28.6153355041317
Replicate 34.6169377073924


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_100967.p1 GENE.R_Transcript_100967~~R_Transcript_100967.p1 ORF type:internal len:256 (-),score=34.88,DDE_Tnp_4|PF13359.2|3.7e-31,DDE_Tnp_1|PF01609.17|8.8e-14,Plant_tran|PF04827.10|1.1e-05 R_Transcript_100967:1-765(-)
GAGTTGCAAAATCGATTCAAACATTCGGGAGAGACAATAAGTAGGAAGTTTGATGAAGTGCTTAATGTGTTGATCAAATTTTCTAAAGATATTGTCAAGCCATGTGATCCGACATTTCAGACTGTGCCTAGTCAAATTCGAGGGAGTTACAAGTATTGGCCCCATTTCAAAGGGTGTATTGGTGCCATAGATAGTACTCATGTCCCAGCTGTTGAATCAAGTGAAGATGCAATTCCATACATTGGAAGAAAACAATATCCCACTCAAAACGTGCTAGTTATCTGTGATTTTGACATGCTATTTACATTTTTTGTGGCTGGGTGGCCTGGTTCGGTTCATGACAACCGAATTCTAAAGGATGCACTTGAAGATTCAAAGAAGGTTTTCCCACATCCACCTGAAGGCAAATATTATGTTGTAGATGCTGGTTATCCTAATATGAAAGGATATTTGGCCCCATTTAAAGGTCAAAAATATCATTTACCTGATTTTCGACGCTCTAGCCAACCTCCAACTGGATTTTGTGAAGTGTTCAATTACAATCATGCATCGTTGAGAAATGTAGTTGAGCGCACAATAGGGATATGGAAAAATCGATGGGCAATTTTGAGAAATATGCCAAGTTTTTCACTTCAAGTGCAAAACAAAATAATCGGAGCTACCATGGCTATACACAATTACATAAGGAGAAATGCATTAGAAGATTTAGAGTTTGACAAGTGCGATGTTGATCCAGATTATATGCCTGATGGGGGAAATCTTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_100967.p1 GENE.R_Transcript_100967~~R_Transcript_100967.p1 ORF type:internal len:256 (-),score=34.88,DDE_Tnp_4|PF13359.2|3.7e-31,DDE_Tnp_1|PF01609.17|8.8e-14,Plant_tran|PF04827.10|1.1e-05 R_Transcript_100967:1-765(-)
ELQNRFKHSGETISRKFDEVLNVLIKFSKDIVKPCDPTFQTVPSQIRGSYKYWPHFKGCIGAIDSTHVPAVESSEDAIPYIGRKQYPTQNVLVICDFDMLFTFFVAGWPGSVHDNRILKDALEDSKKVFPHPPEGKYYVVDAGYPNMKGYLAPFKGQKYHLPDFRRSSQPPTGFCEVFNYNHASLRNVVERTIGIWKNRWAILRNMPSFSLQVQNKIIGATMAIHNYIRRNALEDLEFDKCDVDPDYMPDGGNLE

Click here to download the sequence:
Link to NCBI Protein BLAST