Transcript Information: R_Transcript_101006.p1


Annotated TAIR IDAT2G17525.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:7624178-7626058 | Forward length=626
E-Value8.5E-260
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.7354379835355
Replicate 24.7538793395392
Replicate 35.2944818028843
Condition 2: 8 Hour
Replicate 14.1579770665133
Replicate 24.2541929289048
Replicate 35.1372482887888
Condition 3: 24 Hour
Replicate 15.0897025457646
Replicate 23.8145888018294
Replicate 35.0245359815833


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_101006.p1 GENE.R_Transcript_101006~~R_Transcript_101006.p1 ORF type:complete len:636 (+),score=89.00,PPR_1|PF12854.3|32,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|6e+03,PPR_1|PF12854.3|0.00094,PPR_1|PF12854.3|9.3e-09,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|0.0056,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|7.5e-13,PPR_1|PF12854.3|4.2e-08,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|0.079,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|2.9e-08,PPR_1|PF12854.3|2.8e-08,PPR_1|PF12854.3|1.2e+02,PPR_2|PF13041.2|26,PPR_2|PF13041.2|9,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|1.6e-11,PPR_2|PF13041.2|0.0006,PPR_2|PF13041.2|0.38,PPR_2|PF13041.2|1.6e-13,PPR_2|PF13041.2|3.5e-17,PPR_2|PF13041.2|9.6e-05,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.28,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|5.4e-15,PPR_2|PF13041.2|3.5e-07,PPR|PF01535.16|55,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.0015,PPR|PF01535.16|2.3,PPR|PF01535.16|6.6e-05,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.016,PPR|PF01535.16|0.1,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|4e+03,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|20,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.005,PPR_3|PF13812.2|0.00077,ATP13|PF12921.3|25,ATP13|PF12921.3|78,ATP13|PF12921.3|1e+02,ATP13|PF12921.3|4.2e+03,ATP13|PF12921.3|3.2e+03,ATP13|PF12921.3|1.6e+02,ATP13|PF12921.3|70,ATP13|PF12921.3|1.7 R_Transcript_101006:1230-3137(+)
ATGATATCTTCCAGACATCTCACCATTCCAAAGACTAAGATAACCCTTTTTAGTACCCTACATTACAAAACTATCTGCTCCACACCATCAACACCAACATCGACCACCCAATTGTCTCCACCAAGTCAGGAGCACATTGCTCATCTAATCCGAGACCAACAATCCGCCACCAAAGCCCTTGAAACATTTAGATGGGCATCACAGCTACCCAATTTTACTCACAGTCAATCCACTTACCGAGCTTTGATTCATAAGCTCTGCACTTTCCGTCGGTTCGATTATGTCCACCATGTGCTTGATGAAATACCAAGTTCCATTGGCTCACCCCCAAATGAAGATATTTTCATCACCATTGTCCGAGGTCTTGGACGGGCTGAAAGAATTCGACAAGTCATTGATGTCATTGATTTGGTTCCTAAGTTTGGGGTGATTCCATCTATCAAGATATATAATTCTATACTTGATGTCTTGGTTGAGAAAGATATTGATATTGCAAGGGAATTCTTTAGGAAGAAAATGATGGAGGGTGGTGTTCCTGTTCGAGGTGATGATTACACTTACGGGATATTGATGAAAGGACTTTGTTTGACGAACCGAATTGGGGATGGCTTTAAACTCTTACAACTGATGAAAACACGAGGTTTGACCCCAAATACAACAATTTATAACATGTTGCTTCACGCTCTTTGCAAGAATGGCAAGGTCAGTAGAGCTAGGAGTTTGATGAGTGAGATAGTAGAGCCCAATGATGTGACTTTTAATCTTATGATATCAGCATATTGTAAAGAACAAAATTTAGTTCAGGCACTGTTGCTTTTGGAAAAAAGCTTTGCTTCAGGATATCTTCCTGAAGTTGTGACTTTGACAAAAGTGATACAACTGTTATGCAGTGTAGGCCGTGCAAATGAAGCTGCTGAAGTTTTGGACAGGACTGAAAGCAGTGGAGGTAGAACTGATGTTGTGGCATATAACACTCTGATCAAAGGATTTTGTAGCTTAGGGAAACCAAAAGTTGGGCTGCATTTTAAAAAACAAATGGAAAATAAAGGGTGTCTACCAAATGTAGGAACATATAATGCTTTAATAGCTGGCTTTTGTGACATTGGTTTGTTAGATTCAGCCCTTGATCTGTTCAATGAGATGAAAACAGATGCAATCAGCTGTAATTTTGTCACATATGATACCTTGATAAGAGGCTTTTGTTGTAAAGGGCAGGTAGAAGACGGGTTCAAAGTTTTGGAGTTCATGGAGGAGAGCAAAGGTGGTAGTGAAGGTCACATTAGTCCGTACAACAGTATCATTTATGGCCTATACCGTGAAAATCGTTGGAGTCAAGCTCTGGTCTTTTTTAACAAGATGGGAAAAATGTTTCCGCGAGCAGTTGACAGGACAGTGAAGATTCTAGCCTTTTGTAAAGAAGGGAACATAAAAAGTGCTAGGGAAGCTTATGACCAGATGATTAATGAAGGTGGAATTCCTTGTGTTCTCGTCTACTCCAGCTTAATCCAGAGCTTTTGCCAGCAGAAGCATGTTCGAGAAGCATTTGTTTTGATGAATGAAATGGTTGATCATGATTATTCTCCTATTACACTAACGTACAATGCTCTTATTAGTGGACTTTGCAGTCAAGGGAGAATTATTAGTGCTCTGAAGCTTTTAGATGACATGGTTGAGAGAGGATGCCTAGCAGATGTCGGAACTTACAGCCCTTTAATCAATAGTCTTTGCAGCAAGGGGGATATACAAAAAGCTCTGAAGATTTTCCGCCAGTTGGTGGACGAAGGTATTAGGCCTGACTATAGTATTTGGAATTCGCTGGTGAATTACGCTAGCCAGGAGACTCCATGGCTAGAAGCCAAGAACTTTATTCATGTAAACAACCTTATACTAAAGATTATACAGACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_101006.p1 GENE.R_Transcript_101006~~R_Transcript_101006.p1 ORF type:complete len:636 (+),score=89.00,PPR_1|PF12854.3|32,PPR_1|PF12854.3|2.8e+02,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|6e+03,PPR_1|PF12854.3|0.00094,PPR_1|PF12854.3|9.3e-09,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|0.0056,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|7.5e-13,PPR_1|PF12854.3|4.2e-08,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|0.079,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|2.9e-08,PPR_1|PF12854.3|2.8e-08,PPR_1|PF12854.3|1.2e+02,PPR_2|PF13041.2|26,PPR_2|PF13041.2|9,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|0.00015,PPR_2|PF13041.2|1.6e-11,PPR_2|PF13041.2|0.0006,PPR_2|PF13041.2|0.38,PPR_2|PF13041.2|1.6e-13,PPR_2|PF13041.2|3.5e-17,PPR_2|PF13041.2|9.6e-05,PPR_2|PF13041.2|0.0027,PPR_2|PF13041.2|0.28,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|5.4e-15,PPR_2|PF13041.2|3.5e-07,PPR|PF01535.16|55,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|0.00019,PPR|PF01535.16|0.0015,PPR|PF01535.16|2.3,PPR|PF01535.16|6.6e-05,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|2.3e-05,PPR|PF01535.16|0.016,PPR|PF01535.16|0.1,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.7e-08,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|4e+03,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|1.7,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|20,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|0.47,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.005,PPR_3|PF13812.2|0.00077,ATP13|PF12921.3|25,ATP13|PF12921.3|78,ATP13|PF12921.3|1e+02,ATP13|PF12921.3|4.2e+03,ATP13|PF12921.3|3.2e+03,ATP13|PF12921.3|1.6e+02,ATP13|PF12921.3|70,ATP13|PF12921.3|1.7 R_Transcript_101006:1230-3137(+)
MISSRHLTIPKTKITLFSTLHYKTICSTPSTPTSTTQLSPPSQEHIAHLIRDQQSATKALETFRWASQLPNFTHSQSTYRALIHKLCTFRRFDYVHHVLDEIPSSIGSPPNEDIFITIVRGLGRAERIRQVIDVIDLVPKFGVIPSIKIYNSILDVLVEKDIDIAREFFRKKMMEGGVPVRGDDYTYGILMKGLCLTNRIGDGFKLLQLMKTRGLTPNTTIYNMLLHALCKNGKVSRARSLMSEIVEPNDVTFNLMISAYCKEQNLVQALLLLEKSFASGYLPEVVTLTKVIQLLCSVGRANEAAEVLDRTESSGGRTDVVAYNTLIKGFCSLGKPKVGLHFKKQMENKGCLPNVGTYNALIAGFCDIGLLDSALDLFNEMKTDAISCNFVTYDTLIRGFCCKGQVEDGFKVLEFMEESKGGSEGHISPYNSIIYGLYRENRWSQALVFFNKMGKMFPRAVDRTVKILAFCKEGNIKSAREAYDQMINEGGIPCVLVYSSLIQSFCQQKHVREAFVLMNEMVDHDYSPITLTYNALISGLCSQGRIISALKLLDDMVERGCLADVGTYSPLINSLCSKGDIQKALKIFRQLVDEGIRPDYSIWNSLVNYASQETPWLEAKNFIHVNNLILKIIQT*

Click here to download the sequence:
Link to NCBI Protein BLAST