Transcript Information: R_Transcript_101618.p1


Annotated TAIR IDAT1G08190.1
Annotated Gene Namevacuolar protein sorting 41
Annotated Gene Symbol(s)ATVPS41, ZIP2, VPS41, ATVAM2, VAM2
Annotation TypeOrtholog
Chromosome Positionchr1:2567652-2573142 | Forward length=980
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.182630259992
Replicate 212.267995426486
Replicate 315.447056556987
Condition 2: 8 Hour
Replicate 114.255644932637
Replicate 213.955063431777
Replicate 317.467361424226
Condition 3: 24 Hour
Replicate 118.318166604723
Replicate 213.325533382056
Replicate 319.366607811967


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_101618.p1 GENE.R_Transcript_101618~~R_Transcript_101618.p1 ORF type:complete len:955 (+),score=181.69,Clathrin|PF00637.16|22,Clathrin|PF00637.16|2e+02,Clathrin|PF00637.16|4.2e-21 R_Transcript_101618:172-3036(+)
ATGTCCCCATTCCCGACGGAAAACGGCGTCGAAGGCGACGACGAGCGAGAAGAACCAGAACTATACGACGACGATGAATTCTCTCACGACGAAGATGAAGATGAAGATGACGATGACGAAGAAGAAGATGAGCCGAAGCTCAAGTACCAGAGAATGGGAGGGAGTTTGTCTTCTTTATTGACTACTGATGCTGCCTCTTGTATATCCGTCTCTGAACGAATGATCGCTCTTGGTACTCACGTTGGCACCGTTCACATACTGGATTTTCTCGGCAATCAGATTAAGGAATTACCTGCACACAAAGCGGCTGTCAATGGCCTTAGCTTTGACATAGATGGTGAATTTATAGGAAGTTGCTCAGATGATGGATCAGTTGTTATAAATAGCCTCTTTACTGATGAAAGACGCAAGTTTGAATATCATAGACCGATGAAGGCTATCGCTCTTGATCCTGATTATGCAAGAAAATCGTCAAGCAGATTTGTGGCTGGTGGATTAGCTGGTCAACTGATATTCTACACAAAAAAGTGGTTTGGATATCAGGAGCAGGTATTGCACTCTGGTGAGGGTCCAATACATGCAGTAACATGGAGGACTAGTCTTATTGCTTGGGCTAATGATGCAGGCGTGAAAGTTTATGACACTGCCACTGATCAGCGTGTGACTTTTATTGAGAGACCGCGTGGAAGTCCACATCCTGAACTGGTGCTTCCACATGTGGTTTGGCAGGATGATACACTTTTGATCATTGGTTGGGGCACATCTGTAAAGATTGCTTCGTTAAGAGCCAACAGACACGGGGGCACCAATGGCTCGAATAAGCCTATACCTATGTCAAGTCTGAGCCAGGTGGATATTGTTGCATCTTTCCAAACAAACTACTATATTTCAGGTATTGCTCCATTTGGTGATTCGTTGGCTATTCTAGCGTATATTCCTGGAGAAGAAGATGGAGAGAAGGACTTTAGTAGCACAGCTCCGCCACGACAGGGCAATGCACAAAGACCGGAAGTACGTGTCGTGACATGGACAGATGATGAACTCGCAACTGATGCATTGCCTGTTCATGGTTTTGAACATTATAAAGCAAAAGATTATGCTCTTTCATATACTCCCTTCTCAGGGAACAGCTATGTCAATGGCCGGTGGGTAATTGGTGATGAGCCACTATACTATGTTGTATCGCCAAAGGACATCGTTATTGCTAAGCCAAGGGATACTGAAGATCATATCAATTGGCTTCTTGAACATGGCCGGTATGATAAAGCTCTAGCTGAAGTTGAAGCAACACAAGGACGGAAAGAACTTTTTGAAGAGGTGGGATCGAGATACCTTGAACATCTACTTGCTGAGAAAAAATATGCTGATGCTTCATCGTTGTGTCCAAAATTGTTACAAGGGTCTGCATCAGCATGGGAAAGGTGGATTATCCGCTTCGCTCAGCTGCGCCAGCTTCCAGTATTAGTTCCTTACATGCCAACAGAAAACCCTAAACTGAGTGATACTTTGTATGAGCTTGCACTTGTAGCACTTGCAATGAATCCTGCTTACCACAAGGATTTTTTATCAGCTGTAAAGACTTGGCCAAGGTCTGTATATTCTGTACTACCTGTTCTGTCCGAGATAGAACCTCAGCTTAGAGCATCTTTGATGACTGACCCTCTCAAAGAGGCACTGGGTGAATTATATGTAAGGACTGGGCAAAATGAGAAAGCTTTTTCATTCTTTGCTGATTTACTGAAGCCAGAGGTATTTGACTTCATCGAAAAACATAATCTGCATGATGCTATCCGTGAAAAGGTTGTGCAACTGATGATGCTTGACAGTAAACGTTCAACCTCCTTACTGATCCAGCAAAGGGATTTAATTACACCATCTGATGTAGTATCACAGCTTTTAAAGGCTGGGGATAAATGTGATTTCAGATACTTTTTGTATCTATATTTGCATTCCTTATTTGAGGTCAATCCACATGCTGGCAAGGATTTCCATGACATGCAGGTGGAGCTGTATGCAGAGTATGATCCAAAAATGCTACTTCCTTTCCTTCGTAGCAGTCAGCATTATACTCTGGAAAAAGCATATGAGATTTGCACGAGAAAAGGTCTCCTGAAAGAGAAGGCATTCATACTTGGAAGAATGGGAAATTCAAAGCAAGCCCTTTCTGTTATCATCAATGAATTGGGTGATATGGAAGAGGCTTTAGAATTTGCTAATATGCAGAACGATGATGAAATTTGGGACGAACTGATCAAACAGTCTACCCAGAGGCCTGAAATGGTTGGTATGTTGTTGGAGCATACAGTGGGCAACCTTGATCCCCTTCACATTGTAAATGTGGTGCCTGATGGCCTTGAAATACCTCGGCTGAGAGATCGGCTAGTTAAAATCATTACTGACTATCGAACAGAAACTTCTCTTAGACATGGTTGCAATGATATTCTAAAGGCTGATATTGTCAATTTGTTGGTCAAATACTACAAAGAAGCAAGGCATGCAATTTATTTGAGCAACGAAGAAGATGAAGCACGAGCTAAAAGGGATGATAATCGCATGGCCAAGTCCTCTGAAAGAGCACCAATTTTGAGGAACATGGGCCTAAAGTCAAAGACTAGAGCAGGTGGCCGGTGTTGCATGTGTTTTGATCCTATCACCATTCAAAATGTCTCCGTAGTGGTTTTCTTTTGCTGTCATGCTTATCACATGACTTGCTATATCGACTCTGCCAATACATTTAGCGACGAGAAAGGGCCACAAGATTCAGTTTCAGAGTATGATGAATATGATGATGAGGTAGAAGATGATGAAAATCAATCAGATTACCCACGGATGAGGTGTATATTGTGTACTAACGCAACTAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_101618.p1 GENE.R_Transcript_101618~~R_Transcript_101618.p1 ORF type:complete len:955 (+),score=181.69,Clathrin|PF00637.16|22,Clathrin|PF00637.16|2e+02,Clathrin|PF00637.16|4.2e-21 R_Transcript_101618:172-3036(+)
MSPFPTENGVEGDDEREEPELYDDDEFSHDEDEDEDDDDEEEDEPKLKYQRMGGSLSSLLTTDAASCISVSERMIALGTHVGTVHILDFLGNQIKELPAHKAAVNGLSFDIDGEFIGSCSDDGSVVINSLFTDERRKFEYHRPMKAIALDPDYARKSSSRFVAGGLAGQLIFYTKKWFGYQEQVLHSGEGPIHAVTWRTSLIAWANDAGVKVYDTATDQRVTFIERPRGSPHPELVLPHVVWQDDTLLIIGWGTSVKIASLRANRHGGTNGSNKPIPMSSLSQVDIVASFQTNYYISGIAPFGDSLAILAYIPGEEDGEKDFSSTAPPRQGNAQRPEVRVVTWTDDELATDALPVHGFEHYKAKDYALSYTPFSGNSYVNGRWVIGDEPLYYVVSPKDIVIAKPRDTEDHINWLLEHGRYDKALAEVEATQGRKELFEEVGSRYLEHLLAEKKYADASSLCPKLLQGSASAWERWIIRFAQLRQLPVLVPYMPTENPKLSDTLYELALVALAMNPAYHKDFLSAVKTWPRSVYSVLPVLSEIEPQLRASLMTDPLKEALGELYVRTGQNEKAFSFFADLLKPEVFDFIEKHNLHDAIREKVVQLMMLDSKRSTSLLIQQRDLITPSDVVSQLLKAGDKCDFRYFLYLYLHSLFEVNPHAGKDFHDMQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICTRKGLLKEKAFILGRMGNSKQALSVIINELGDMEEALEFANMQNDDEIWDELIKQSTQRPEMVGMLLEHTVGNLDPLHIVNVVPDGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADIVNLLVKYYKEARHAIYLSNEEDEARAKRDDNRMAKSSERAPILRNMGLKSKTRAGGRCCMCFDPITIQNVSVVVFFCCHAYHMTCYIDSANTFSDEKGPQDSVSEYDEYDDEVEDDENQSDYPRMRCILCTNATK*

Click here to download the sequence:
Link to NCBI Protein BLAST