Transcript Information: R_Transcript_102598.p1


Annotated TAIR IDAT3G53700.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)MEE40
Annotation TypeOrtholog
Chromosome Positionchr3:19900303-19902567 | Forward length=754
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.5388378844621
Replicate 22.0771741053557
Replicate 32.9092781706343
Condition 2: 8 Hour
Replicate 12.8806899937935
Replicate 23.3182592037054
Replicate 35.5085770198233
Condition 3: 24 Hour
Replicate 13.8365319565014
Replicate 23.0959922239447
Replicate 34.7989085142395


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_102598.p1 GENE.R_Transcript_102598~~R_Transcript_102598.p1 ORF type:5prime_partial len:748 (+),score=149.50,PPR_2|PF13041.2|13,PPR_2|PF13041.2|8.6e-10,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|7.3e-10,PPR_2|PF13041.2|9.3e-14,PPR_2|PF13041.2|1.7e-18,PPR_2|PF13041.2|2.6e-18,PPR_2|PF13041.2|3.8e-15,PPR_2|PF13041.2|1.8e-18,PPR_2|PF13041.2|3.8e-09,PPR_2|PF13041.2|9.1e-14,PPR_2|PF13041.2|3.7e-17,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|3.7e-07,PPR_2|PF13041.2|4.9e-11,PPR_2|PF13041.2|5.1,PPR_2|PF13041.2|1.3e+02,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|1.9e-09,PPR_1|PF12854.3|0.0003,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|1e-12,PPR_1|PF12854.3|2.3e-13,PPR_1|PF12854.3|1.1e-09,PPR_1|PF12854.3|6.1e-11,PPR_1|PF12854.3|1.1e-13,PPR_1|PF12854.3|8.4e-17,PPR_1|PF12854.3|2e-12,PPR_1|PF12854.3|2.3e-08,PPR_1|PF12854.3|7.7e-13,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|2.8e+03,PPR|PF01535.16|7e+03,PPR|PF01535.16|5.8e+03,PPR|PF01535.16|0.018,PPR|PF01535.16|22,PPR|PF01535.16|0.00052,PPR|PF01535.16|0.00039,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|4.5e-09,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|0.00034,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|4.3e-08,PPR|PF01535.16|3.9e-10,PPR|PF01535.16|3.3e-07,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|0.00018,PPR|PF01535.16|3.5,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|25,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|8.3,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|1.9e-05,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|5.8e-05,PPR_3|PF13812.2|1.2e-07,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.6e+02,MRP-S27|PF10037.5|2.7e+02,MRP-S27|PF10037.5|0.034,MRP-S27|PF10037.5|0.12,MRP-S27|PF10037.5|0.0026,MRP-S27|PF10037.5|0.0068,MRP-S27|PF10037.5|0.066,MRP-S27|PF10037.5|0.0082,MRP-S27|PF10037.5|6.5e+02,Clathrin|PF00637.16|2.7e+02,Clathrin|PF00637.16|0.11,Clathrin|PF00637.16|39,Clathrin|PF00637.16|13,TPR_19|PF14559.2|4.2e+03,TPR_19|PF14559.2|4.8e+03,TPR_19|PF14559.2|70,TPR_19|PF14559.2|39,TPR_19|PF14559.2|1.3e+03,TPR_19|PF14559.2|45,TPR_19|PF14559.2|7.7,TPR_19|PF14559.2|1.2e+02,TPR_19|PF14559.2|1.5e+03,TPR_19|PF14559.2|2.5e+03,TPR_19|PF14559.2|2.5e+03,ECSIT|PF06239.7|1.4e+02,ECSIT|PF06239.7|1.4e+02,ECSIT|PF06239.7|85,ECSIT|PF06239.7|42,ECSIT|PF06239.7|2.5,ECSIT|PF06239.7|75 R_Transcript_102598:3-2246(+)
CCTCCTCCAACTTTCCTCTCTCCTCTCAAACCCACTTCACTCTCACTCCCATTCCCAGGCCCCCCTCCTCACTCTCTCTCCTCCACGTCATCACCATCTCCCACCACCCACCATAACCTCCCTCCAAACTTCACCCCAAAACAATTCCTGGAAACCCTCCGCAAAGAAAGAGACCCAGAAATGGGCCTCTGGCTCTTCGACTGGGCCTCAGCCCAAGCCCATTTCACCCCCACCTTACCCCTCTACGAAGAACTCCTCCGTAAGCTCGGCTCCCAAGGCTCCTTCGACTCCATGACACGTGTCCTCCAAGAATCAAAGAATTCCGGGAGCCCCGTCATCAATGAAGGTACTTTTTTGATTCTCATTGATTCCTATGCGGGTTCTGGTTTGTTTGATGAAGCTGCTAGTGTTATTGACCTGATGGAACATGAGTTTGGTCTCACCTGTGGGACCCATTTTTTCAATTACTTGCTGAATGTTCTTGTTGATGGGAATAAGTTGAAGTTAGTTGAGGCTGTTCATGCTAGGATGGTTGAATCTGGGGTTAGCCCTGATGTTTCAACTTTTAATATTTTGATTAAAGGGTTATGTAAAGCTCATCAAATTAGGCCTGCCCTTTTGATGATGGAGGAAATGGAGGCTTATGGGCTGAGCCCTGATGAGAAGACATATACAACCATTATGCAGGGTTATATCGAGGAAGGGGATTTGGATGGTGCTTTGAGGGTTAGGGGCATGATGGTTGATGCCGGTTGTTGCTCGAGTAATGTGACTGTTAATGTGTTGGTTTATGGGTTTTGTAAGGAGGGGAGGTTGGAGGAAGGTTTGGAGTTTTTGCAGGAAATGGCGCGTCAAGGGTTTGACCCTGATCAGTTTACTTTTAATACTTTGATTAGTGGGTTGTGCAAGGGAGGTCATGTTAAGCACGCGTTGGAGATCTTGGATGAGATGCTTGAAGAAGGGTTTGATCCGGATGTTTTTACTTACAATGCTTTGATATCAGGATTGTGCAAGATTGGGGAGGTTGAAGAGGCGATGGAAGTGCTCGAGTTGATGATTTTGAAGGATTGCACCCCTAATACGGTTACCTATAATGCTTTGATTAACACCATGTGTAAAGATAACCAAGTTGAAAAGGCTACTGAGTTTGTCCGTTTGCTTACTAGCAAAGGGGTGCTGCCTGATGTGTGTACGTTCAATTCTCTTATACAAGGACTTTGCTTGTCGAGAAATCACAGAGTCGCTATGGAGCTGTTTGAGGAGATGAAAACTAAGGGGTGTGAGCCTGATGAATTTACTTATAATATGTTGATTGACAGTTTGTGTACTAGAGGAAAAATAGATGAAGCATTGAACCTGCTCAAGGACATGGAATCGAGTGGCTGTGCAAGAAATGTGGTGACATATAATACATTAATTGACGGGTTCTGCAAAAACAAGAGGATTGAAGATGCCGAGGAGGTTTTTGATCAGATGGAACTGCAAGGGGTTTCGAGAAACATGGTTACATACAATACCCTTATTGATGGTCTTTGTAAAAGTAAGAGGGTAGAGGATGCCGCTCTATTTTTGGACCAGATGTTAATGGAAGGGCTAAAACCTGATAAGTATACCTATAATTCCCTGCTTTCTCATTTTTGTAGGGCAGGTGATATTCAAAAGGCGGCAGATATAGTGCAAACTATGACCTCTAATGGATGTGAACCAGATATTGTCACATACGGGACTTTAATTCAAGGGCTGTGTAAGGCAGGTCGGGTTGAGGTTGCCACTCGACTCCTCAGAAGCATTCAGATGAAAGGAATGGTTCTGACCCCTCAGGCATACAATCCTGTGATACAAGCTCTTTTCAAAAAGAGAAGATCAAAGGAAGCTACTAGGCTCTTTCGAGAAATGATGGAAAAGGGTGACCCTCCAGATGCTATCAGCCACAAGATAGTCTTCCGCGGTCTTTGCTCCAGTGGAGGACCGATTGTAGAAGCTGTAGATTTCTTATTTGAGATGTTGGAGAGAGGATTTGTGCCAGAATTCCCATCATTTTTGATGCTGGCTGATGGTCTTTGCTCCTTGTCAATGGAAGACACCCTAGTGAAGCTTGTTGATAAGATCATGAAGCAAGGAAGATTCTCAGATAGTGAGGTTTCTATGATCAGGGGCTTCCTTAAAATTCGCAAGTTCCAAGACGCATTGGCTACTCTTGGCCGTGTTTTGAATGACCGATTCCCCAAGAGAGTTTATCGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_102598.p1 GENE.R_Transcript_102598~~R_Transcript_102598.p1 ORF type:5prime_partial len:748 (+),score=149.50,PPR_2|PF13041.2|13,PPR_2|PF13041.2|8.6e-10,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|7.3e-10,PPR_2|PF13041.2|9.3e-14,PPR_2|PF13041.2|1.7e-18,PPR_2|PF13041.2|2.6e-18,PPR_2|PF13041.2|3.8e-15,PPR_2|PF13041.2|1.8e-18,PPR_2|PF13041.2|3.8e-09,PPR_2|PF13041.2|9.1e-14,PPR_2|PF13041.2|3.7e-17,PPR_2|PF13041.2|1.3e-15,PPR_2|PF13041.2|3.7e-07,PPR_2|PF13041.2|4.9e-11,PPR_2|PF13041.2|5.1,PPR_2|PF13041.2|1.3e+02,PPR_1|PF12854.3|0.11,PPR_1|PF12854.3|1.9e-09,PPR_1|PF12854.3|0.0003,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|1e-12,PPR_1|PF12854.3|2.3e-13,PPR_1|PF12854.3|1.1e-09,PPR_1|PF12854.3|6.1e-11,PPR_1|PF12854.3|1.1e-13,PPR_1|PF12854.3|8.4e-17,PPR_1|PF12854.3|2e-12,PPR_1|PF12854.3|2.3e-08,PPR_1|PF12854.3|7.7e-13,PPR_1|PF12854.3|0.021,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|2.8e+03,PPR|PF01535.16|7e+03,PPR|PF01535.16|5.8e+03,PPR|PF01535.16|0.018,PPR|PF01535.16|22,PPR|PF01535.16|0.00052,PPR|PF01535.16|0.00039,PPR|PF01535.16|2.5e-06,PPR|PF01535.16|4.5e-09,PPR|PF01535.16|1.2e-08,PPR|PF01535.16|0.00034,PPR|PF01535.16|1.4e-07,PPR|PF01535.16|4.3e-08,PPR|PF01535.16|3.9e-10,PPR|PF01535.16|3.3e-07,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|0.00018,PPR|PF01535.16|3.5,PPR|PF01535.16|3.6e+03,PPR|PF01535.16|25,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|8.3,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|1.9e-05,PPR_3|PF13812.2|0.036,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|5.8e-05,PPR_3|PF13812.2|1.2e-07,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.6e+02,MRP-S27|PF10037.5|2.7e+02,MRP-S27|PF10037.5|0.034,MRP-S27|PF10037.5|0.12,MRP-S27|PF10037.5|0.0026,MRP-S27|PF10037.5|0.0068,MRP-S27|PF10037.5|0.066,MRP-S27|PF10037.5|0.0082,MRP-S27|PF10037.5|6.5e+02,Clathrin|PF00637.16|2.7e+02,Clathrin|PF00637.16|0.11,Clathrin|PF00637.16|39,Clathrin|PF00637.16|13,TPR_19|PF14559.2|4.2e+03,TPR_19|PF14559.2|4.8e+03,TPR_19|PF14559.2|70,TPR_19|PF14559.2|39,TPR_19|PF14559.2|1.3e+03,TPR_19|PF14559.2|45,TPR_19|PF14559.2|7.7,TPR_19|PF14559.2|1.2e+02,TPR_19|PF14559.2|1.5e+03,TPR_19|PF14559.2|2.5e+03,TPR_19|PF14559.2|2.5e+03,ECSIT|PF06239.7|1.4e+02,ECSIT|PF06239.7|1.4e+02,ECSIT|PF06239.7|85,ECSIT|PF06239.7|42,ECSIT|PF06239.7|2.5,ECSIT|PF06239.7|75 R_Transcript_102598:3-2246(+)
PPPTFLSPLKPTSLSLPFPGPPPHSLSSTSSPSPTTHHNLPPNFTPKQFLETLRKERDPEMGLWLFDWASAQAHFTPTLPLYEELLRKLGSQGSFDSMTRVLQESKNSGSPVINEGTFLILIDSYAGSGLFDEAASVIDLMEHEFGLTCGTHFFNYLLNVLVDGNKLKLVEAVHARMVESGVSPDVSTFNILIKGLCKAHQIRPALLMMEEMEAYGLSPDEKTYTTIMQGYIEEGDLDGALRVRGMMVDAGCCSSNVTVNVLVYGFCKEGRLEEGLEFLQEMARQGFDPDQFTFNTLISGLCKGGHVKHALEILDEMLEEGFDPDVFTYNALISGLCKIGEVEEAMEVLELMILKDCTPNTVTYNALINTMCKDNQVEKATEFVRLLTSKGVLPDVCTFNSLIQGLCLSRNHRVAMELFEEMKTKGCEPDEFTYNMLIDSLCTRGKIDEALNLLKDMESSGCARNVVTYNTLIDGFCKNKRIEDAEEVFDQMELQGVSRNMVTYNTLIDGLCKSKRVEDAALFLDQMLMEGLKPDKYTYNSLLSHFCRAGDIQKAADIVQTMTSNGCEPDIVTYGTLIQGLCKAGRVEVATRLLRSIQMKGMVLTPQAYNPVIQALFKKRRSKEATRLFREMMEKGDPPDAISHKIVFRGLCSSGGPIVEAVDFLFEMLERGFVPEFPSFLMLADGLCSLSMEDTLVKLVDKIMKQGRFSDSEVSMIRGFLKIRKFQDALATLGRVLNDRFPKRVYR*

Click here to download the sequence:
Link to NCBI Protein BLAST