Transcript Information: R_Transcript_102642.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value3E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.7322491364086
Replicate 22.3329222684776
Replicate 33.3935907549856
Condition 2: 8 Hour
Replicate 11.5664358047059
Replicate 24.5926390313546
Replicate 31.7112629541106
Condition 3: 24 Hour
Replicate 13.3238576120918
Replicate 22.8218849758988
Replicate 33.4637108427077


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_102642.p1 GENE.R_Transcript_102642~~R_Transcript_102642.p1 ORF type:5prime_partial len:297 (+),score=19.34,PIF1|PF05970.10|4.4e-24 R_Transcript_102642:1-891(+)
GGCCTCTATTCCATCGCTTCACACTTGTTGAAAACATGCGCACTAAAGAAGATCCTGATTTCACTGCATTCCTTCTTAAGCTTGGCAATGGTGAACTCCAGACAAATGAGCAGGAGGCTATTACACTGCCTCCCTCACTTCTGTGTAAACTCCCAAGAACCGAACACTGCTTGGACTATCTTGTTGCTTCAGTCTACCCAGACATACAATGAACTATCTACTAATCCTCATGCATTCACTGCACAAGCAACTTTAACTCCAACAAACGATGAAGTCGACTGCATCAACAAGCTTGTCATAGACAAATTCCCAGGAGAAGCATATGTGTACAAAAGCTATGACACTACCATAGATGATGATTGCAATGCTCATCCGGTTGAGTTTCTCAACACACTCTGTCCAGGAGGCATGAGTCCCCACAATCTAATACTAAAGCTTAATTGCCCAGTCATACTGCTGCGAAATCTTAACCCATCCATTGGCCTGTGTAATGGAACAAGACTCATTTGTAGAGGATTCAAGTGCAATGTTATCATTTGTGAGATTGCAACAGGCTATCGAAGTGGTGAATATGTCTTCATACCGCGCATAAGTCTGAGGCCCTCGGCTTCCATCACATATCCATACAAGTTTGAAAGGCTCCAATTCCCAATCAAATTATGCTTTGTAATGACGATTAACAAATCCCAAGGGCAGACCCTAACAGATGTTGCAGTTTACCTAAGCAGACAATGCTTCTCGCATGGGCAGCTGTATGTTGCTCTATCTAGAGCTAAGAAAGCTAGAAGCGTGAAGGTTTTCATCAAAGAAGATCAGATAGATGATTCAGTGCCACCCTCTGTCTCTAATGTAGTATCGTTTGACCTGCTGAGAAAGGCTGGGATACTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_102642.p1 GENE.R_Transcript_102642~~R_Transcript_102642.p1 ORF type:5prime_partial len:297 (+),score=19.34,PIF1|PF05970.10|4.4e-24 R_Transcript_102642:1-891(+)
GLYSIASHLLKTCALKKILISLHSFLSLAMVNSRQMSRRLLHCLPHFCVNSQEPNTAWTILLLQSTQTYNELSTNPHAFTAQATLTPTNDEVDCINKLVIDKFPGEAYVYKSYDTTIDDDCNAHPVEFLNTLCPGGMSPHNLILKLNCPVILLRNLNPSIGLCNGTRLICRGFKCNVIICEIATGYRSGEYVFIPRISLRPSASITYPYKFERLQFPIKLCFVMTINKSQGQTLTDVAVYLSRQCFSHGQLYVALSRAKKARSVKVFIKEDQIDDSVPPSVSNVVSFDLLRKAGIL*

Click here to download the sequence:
Link to NCBI Protein BLAST