Transcript Information: R_Transcript_102644.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value6E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2816201193398
Replicate 21.9152030785137
Replicate 31.4703649132665
Condition 2: 8 Hour
Replicate 11.985340401128
Replicate 20
Replicate 31.7170442478744
Condition 3: 24 Hour
Replicate 12.1716844674855
Replicate 21.117665146482
Replicate 31.0352292757316


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_102644.p1 GENE.R_Transcript_102644~~R_Transcript_102644.p1 ORF type:5prime_partial len:296 (+),score=32.17,PIF1|PF05970.10|8.7e-36 R_Transcript_102644:3-890(+)
CCTCTATTCCATCGCTTCACACTTGTTGAAAACATGCGCACTAAAGAAGATCCTGATTTCACTGCATTCCTTCTTAAGCTTGGCAATGGTGAACTCCAGACAAATGAGCAGGAGGCTATTACACTGCCTCCCTCACTTCTGTGTAAACTCCCAAGAACCGAACACTGCTTGGACTATCTTGTTGCTTCAGTCTACCCAGACATCAATGAACTATCTACTAATCCTCATGCATTCACTGCACAAGCAACTTTAACTCCAACAAACGATGAAGTCGACTGCATCAACAAGCTTGTCATAGACAAATTCCCAGGAGAAGCATATGTGTACAAAAGCTATGACACTACCATAGATGATGATTGCAATGCTCATCCGGTTGAGTTTCTCAACACACTCTGTCCAGGAGGCATGAGTCCCCACAATCTAATACTAAAGCTTAATTGCCCAGTCATACTGCTGCGAAATCTTAACCCATCCATTGGCCTGTGTAATGGAACAAGACTCATTTGTAGAGGATTCAAGTGCAATGTTATCATTTGTGAGATTGCAACAGGCTATCGAAGTGGTGAATATGTCTTCATACCGCGCATAAGTCTGAGGCCCTCGGCTTCCATCACATATCCATACAAGTTTGAAAGGCTCCAATTCCCAATCAAATTATGCTTTGTAATGACGATTAACAAATCCCAAGGGCAGACCCTAACAGATGTTGCAGTTTACCTAAGCAGACAATGCTTCTCGCATGGGCAGCTGTATGTTGCTCTATCTAGAGCTAAGAAAGCTAGAAGCGTGAAGGTTTTCATCAAAGAAGATCAGATAGATGATTCAGTGCCACCCTCTGTCTCTAATGTAGTATCGTTTGACCTGCTGAGAAAGGCTGGGATACTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_102644.p1 GENE.R_Transcript_102644~~R_Transcript_102644.p1 ORF type:5prime_partial len:296 (+),score=32.17,PIF1|PF05970.10|8.7e-36 R_Transcript_102644:3-890(+)
PLFHRFTLVENMRTKEDPDFTAFLLKLGNGELQTNEQEAITLPPSLLCKLPRTEHCLDYLVASVYPDINELSTNPHAFTAQATLTPTNDEVDCINKLVIDKFPGEAYVYKSYDTTIDDDCNAHPVEFLNTLCPGGMSPHNLILKLNCPVILLRNLNPSIGLCNGTRLICRGFKCNVIICEIATGYRSGEYVFIPRISLRPSASITYPYKFERLQFPIKLCFVMTINKSQGQTLTDVAVYLSRQCFSHGQLYVALSRAKKARSVKVFIKEDQIDDSVPPSVSNVVSFDLLRKAGIL*

Click here to download the sequence:
Link to NCBI Protein BLAST