Transcript Information: R_Transcript_102960.p1


Annotated TAIR IDAT1G79890.1
Annotated Gene NameRAD3-like DNA-binding helicase protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:30048655-30052203 | Forward length=882
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5124616756107
Replicate 22.3379664247337
Replicate 33.5907858934509
Condition 2: 8 Hour
Replicate 12.408879686702
Replicate 22.248175147276
Replicate 33.9835426550687
Condition 3: 24 Hour
Replicate 15.0134887135094
Replicate 23.7911201768668
Replicate 34.8271262228401


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_102960.p1 GENE.R_Transcript_102960~~R_Transcript_102960.p1 ORF type:complete len:925 (+),score=197.02,DEAD_2|PF06733.11|1e-52,Helicase_C_2|PF13307.2|2.8e-49 R_Transcript_102960:51-2777(+)
ATGGGAGTAAAACCAGAAGAAGAGCATTGGAAACAAAAATTCCCAGCATTTCCCTACAAACCTTATTCAATTCAACTCGATTTCATGAATTCCCTTTATCATTTCCTCGATCAAGGTGGCATCTCCATGCTCGAAAGCCCTACTGGTACTGGTAAGACCTTGAGCATAATTTGCAGCGCATTGCAATGGCTTGTTGATAAGCGAAAAGAGCGAAAGCCGAGACCAGGAGATCAGTACCCCTCTGATGATGAACCTGATTGGATGAGAGATTTTGTGGTGAATAAGGGTGACCCAATTGAGGATAAGAAAAAGGGGGCTCAGCCCAAGAAGAAGTTCATTGAGGCAAATCGTCGAACACGTTGTGTGGATTTGTTTGGCGATGGGAGTAAAGATGGGAATGATGAGAATACGAGGGTTGAGAAGGTGGGGAATTGTAAGAAAGTGGATGGGATTCAAATGGAGGATGAGGAGTTTTTGGTGGATGATTATGAGAGTGAAGAAGAAGATGATGAGGGTGGGATTTGCAAGAGGAAAAGAAATGCAGTTTCGTTTAGTTCATCGAGTGATGAGGAGGATGAATTGGGTGAAGAAAATGAGAACTTGAAGGTTTATTTTTGTAGCAGGACGCATTCGCAACTTTCGCAGTTTGTAAAGGAGTTGAGGAAGACTGTTTTTGGTTCTGAGTTGAAAGTTGTGTCTTTAGGTTCTAGGAAGAATTTCTGCATCAATGAAGAGGTTTTGAAGCTTGGAAACCCAACTAGCATCAACGAGCGCTGCTTGGAGCTACAAAAGAGTAAGAAAAATGGAGGCTCCAAGATCAAGAGGCTGGAACCTGGAGGAAGGACACGCCGGACCAAGGCTTCATCTGGCTGCCTGATGCTTAGAAAACAAAAGTTACAGAAAGAATTCATAAGCGAGGTCTCAACGCAAGAGGCTTTGGATATTGAAGATCTTGTTTCTCTTGGAAGCCAATTAGGAACTTGTCCTTATTATGGCTCACGAAGAATGGTTCCGAATGCAGATCTTATTGTGCTTCCCTATCAGTCTCTACTATCAAAATCATCTCGTGAATCCCTTGGTCTGAATCTCAAGAATAATATCATTATAATAGACGAGGCTCACAATCTAGCTGATTCCCTTATTGGCATGTGTGATGCAAAACTTACTTTGTCACAGTTGAAAAATGTGCACCGACACTTGGCGAAGTATTTTGGAAACTTCTGCACCCGCTTGGGGCCTGGAAATAGGAGATATGTGCAAACAATGATGGTTGTGACCCAAGCTTTTCTCCAAGCCATACACCATGGGGCGGTAAAGAGCTACAATGCTACTGGCAATGCTGTTGAAAAGGCTAGGCAACCAGATGCTCCAACTGAAGTATCGGTGACAATAAATGACTTTCTATTTTCTCTGAATATTGACAACATCAATTTTGTAAAGTTGATAGATTACTTAAAGCAAAGCAATATCATTCACAAGGTATGTGGATATGGAGATAAGCTTTCCTGCATGGAAAAACAGAACATTGATGGTTCTATGTGCAAGGATGGAGGAAGTACCTTGTCTGGATTCCATGCACTGGTTGATATGTTGCAAGCATTGACAAACAAAAACATTGATGGAAGGATAATAGTCTCAACCATGAGATCAACAGGATCTGGTGAACAAGAAGGATTCATCAAATATGTCATGCTAACTGGTGAAAAGATCTTTTCTGAGATTGCAAATGAAGCTCATGCAGTTATCTTGGCGGGAGGAACTCTACAACCTATTGAGGAGACGAGGGAGCGACTCTTCCCTGGGCTACCACTGGACCAGTTGCATTTCTTTTCATGTGGTCATATTGTCCCTCCTGAGAGTATCCTACCAATTGCTGTGTCACAAGGACCATCTGGTCAGTCATTTGATTTTAGCTACTCATGTAGAGGCTCGTCGAAAATGATTGAGGAACTAGGTCTTCTGCTTTGCAATTTGGTGACTGTAGTTCCTGGAGGAATAGTTGTGTTCTTCTCTTCATTTGATTATGAGGGCAAGGTCTATGATGTATGGAAGGCTTCTGGCATTCTACATAGGATTACAAGAAAGAAGCATCTGTTCAGAGAACCTCGGAGCAGTGCAGATATTGAAGCTGTGTTAAAAGAATACGGGGAAGCAATTCATACACTAGCTAGTGGCAGAGGCTTAAAAGGAGAAAGATCTCAAAATGGTGCAGTGTTGTTGGCTGTGGTAGGCGGTAAAATATCAGAGGGCATCAACTTCAGTGATGGTATGGGTCGTTGTATAGTTATGGTTGGACTTCCTTACCCAAGCCCGTCAGATATCGAATTGATTGAGAGAATAAAGCATATGGAAGGCCTGGGTGAGACAAATTCCTCTAGTGTCATGCAGCGTCCAATTGGTGATAGATGTAACAGTGGGGATGTTCAAGCTGGGTTTGATGTTCTAAGACGTTGCAAGCGAAGAGGCAAGGAGTATTACGAAAATCTTTGCATGAAAGCTGTAAATCAGTCAATAGGTAGAGCAATTCGCCACATCAATGATTATGCCGCTATCTTATTGGTTGATTCACGGTATGCATCTGCTCCTTCCAAACAAAGCTCTTCACACCCATCAAACAAACTACCACAGTGGATAAGAGATCGTCTTGTTTCTTCAACTGCAAGCTATGGTGAAGTTCTCAGACTGCTGCATCAGTTCTTTAGGCACAACAAGAGTAAAGTAACCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_102960.p1 GENE.R_Transcript_102960~~R_Transcript_102960.p1 ORF type:complete len:925 (+),score=197.02,DEAD_2|PF06733.11|1e-52,Helicase_C_2|PF13307.2|2.8e-49 R_Transcript_102960:51-2777(+)
MGVKPEEEHWKQKFPAFPYKPYSIQLDFMNSLYHFLDQGGISMLESPTGTGKTLSIICSALQWLVDKRKERKPRPGDQYPSDDEPDWMRDFVVNKGDPIEDKKKGAQPKKKFIEANRRTRCVDLFGDGSKDGNDENTRVEKVGNCKKVDGIQMEDEEFLVDDYESEEEDDEGGICKRKRNAVSFSSSSDEEDELGEENENLKVYFCSRTHSQLSQFVKELRKTVFGSELKVVSLGSRKNFCINEEVLKLGNPTSINERCLELQKSKKNGGSKIKRLEPGGRTRRTKASSGCLMLRKQKLQKEFISEVSTQEALDIEDLVSLGSQLGTCPYYGSRRMVPNADLIVLPYQSLLSKSSRESLGLNLKNNIIIIDEAHNLADSLIGMCDAKLTLSQLKNVHRHLAKYFGNFCTRLGPGNRRYVQTMMVVTQAFLQAIHHGAVKSYNATGNAVEKARQPDAPTEVSVTINDFLFSLNIDNINFVKLIDYLKQSNIIHKVCGYGDKLSCMEKQNIDGSMCKDGGSTLSGFHALVDMLQALTNKNIDGRIIVSTMRSTGSGEQEGFIKYVMLTGEKIFSEIANEAHAVILAGGTLQPIEETRERLFPGLPLDQLHFFSCGHIVPPESILPIAVSQGPSGQSFDFSYSCRGSSKMIEELGLLLCNLVTVVPGGIVVFFSSFDYEGKVYDVWKASGILHRITRKKHLFREPRSSADIEAVLKEYGEAIHTLASGRGLKGERSQNGAVLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSDIELIERIKHMEGLGETNSSSVMQRPIGDRCNSGDVQAGFDVLRRCKRRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDSRYASAPSKQSSSHPSNKLPQWIRDRLVSSTASYGEVLRLLHQFFRHNKSKVT*

Click here to download the sequence:
Link to NCBI Protein BLAST