Transcript Information: R_Transcript_103681.p1


Annotated TAIR IDAT4G11130.1
Annotated Gene NameRNA-dependent RNA polymerase 2
Annotated Gene Symbol(s)RDR2, SMD1
Annotation TypeOrtholog
Chromosome Positionchr4:6780522-6784390 | Forward length=1133
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.079504524332
Replicate 22.1886602907449
Replicate 32.5699255076956
Condition 2: 8 Hour
Replicate 13.6988364893807
Replicate 24.0692064127953
Replicate 34.9067074645216
Condition 3: 24 Hour
Replicate 13.9750266931361
Replicate 22.8835497489447
Replicate 34.9111987548339


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_103681.p1 GENE.R_Transcript_103681~~R_Transcript_103681.p1 ORF type:complete len:1132 (+),score=215.91,RdRP|PF05183.8|4.4e-175 R_Transcript_103681:41-3397(+)
ATGGCAATAGGGGGCAGAACACAGAGAGAAAGACCCACAGTAAAGGTCTCAGGAATCCCTTACACAGCCATAGCACAAGACCTCTTTGACTTCCTAGAGTCAACAATTGGTAAAGGCACAGTCTTTGCCATTAATATCTTCACTGAGAGGAAAAACTGGAAGTCTAAAGGTTATGGGAGGGTTCAGTTTGAGACCCTTGAAGCTAAGTCTAAAGCAACCCAACTGGCTGCTCAAAACAAGCTCATCTTTAAAGGGTTCTCTCTTTCTTTCTCTTCTTCTAATGAGGATGTTGTTGTTAGGCCTGTTGATCCTAAACATAGGACTAGTCAAGGGGATTTGCATTTGGGTTTGTTGGAAAAGGAGGATTTGATGAGGGTTGTTGATACTTGGGAGAATGTTAGAGTTTGGGTTATGCCTGAGAGGAATTGTATTGAGTTTCAACTTGAGTTTGTTGGGGATTGTTATAAGTTGGAGGTTCAATTTGATGATGTTCTTGAGTCTTTTGGGTGTTTTTTTGAAAATAAGCCCCCTGCTGTTCTTCTCAAGCTGAAGTTTGCTCCAAAGATATCCCAGAAGATTTCAGGGCCCAATCTTTATACAAATTTTAACTCTGACCGCTATTATATCTGCAAGGAAGACCTCGCATTCCGCTGGGTTCGTACTACGGATTTTTCAAACAAGAAGTCCATTGGAGTGTCTTCTGCCATCTGTTGGGAAATTGAAGATAGATCGTTGGCTCTAGATATATTTTCTAGCCTTCCTTATTACATGAAAGATTTGAAAGGTCTTCAATTAGTAGACTCGGATCAGTTTTCTTGTATGTCTGGGCTTCTTCCTCTTGTGAAATCTGAGGAGATTTTGAATTTAGACTATGAGATCCTTTTCCAGATCATCTCCCTTGTTCACAACCACAAAATTAGTCTTGCTGCCGTTGATACAGAATTGATAGATTTTCTCAGCACTTTGAGAGTAGGCACAGGTCTTACAGTTTTTCAAAAGATGCACAAGCTGAGTTCCACATGTTATGAGCCCCTTTCACATATTAAGACTCAGGCACGTATTCTGGGGAATGCTAAGAGTAATACTCCATCTGCTCAAAGTCGCTTGACTAATGATAATATAATGAGTTGTCATAGGGCACTAGTCACCCCCACAAAAATATACTGCATGGGTCCTGAACTGGAGTCCTCAAACTATGTTGTCAAGAACTTTGCTGCGTATGCCTCTGACTTCATGAGAGTAACGTTTGTAGATGAAGACTGGGGCAAGCTACATGCAAATGTTGTCTCAGTCAATATAGAGACAGGCATTTTCTCTAAGCCTTTCAGAACAGATATATATCACCGGATAATATCTGTTCTTCGGGAAGGAATTGTGATAGGGAATAAAAGATTTGAGTTCCTGGCTTTTTCAGCTAGCCAACTGCGTTCGAATTCTGTTTGGATGTTTGCTTCTAATGATGAAGTGAAGGCAGAGAATATCCGACAATGGATGGGTAGCTTTAGCAAGATCCGCAGTGTGTCAAAGTGTGCAGCTAGGATGGGCCAACTGTTTAGTTCTTCAAGGCAGACATTGGTTGTTCCTGCACAAGATGTTGAAGTTATACCCGATATTGAAGTGAATACTGATGGAGTTGACTATTGCTTCTCTGATGGTATTGGGAAGATTTCCCTGTCCTTTGCTAGACAAGTTGCACAAAAGTATGGACTAAAGCAGACTCCATCAGCATTTCAGATTCGTTATGGTGGTTATAAAGGTGTGATAGCTGTAGACCGAAATTCCTTCAGGAAGCTATCTCGACGCCGTAGCATGTTGAAGTTTGAATCAAAAAATAGGATGCTTAACGTCACTAAGGCTTGTGAGGCCATGCCATGTTATATGAATAGAGAGATTGTTACTCTTTTGACCACCTTGGGAGTTGAGGACAGTGGTCTTGAAGCATTGCTGCAAGAACACATGCGTCTTCTTGGAAGCATGCTGACAAGTAGAGATGCAGCTTTGGCTGTGCTTGATGCCATCGGTATAGGTGATGATGGAATTCTTCCAAAAATGTTGCGTCATGGCTATGAACCAAGTGCGGAGCCTTACCTGTTAATGATGCTTCGAGCATACCTGGAGAACCAACTGTCTGATTTAAAAAATAGATGCCGCATGTATGTTCCAAAGGGACGCATCCTACTTGGATGCTTGGATGAGACAGGAATCTTGAATTATGGCCAGGTGTTTGTCCGCTTAACACTGAGAAAGACAGAACTCGAATGTGCAGATCAAAGTGTCTTCCATAAAGTGGATGAGAAAACAGCAATAGTTGTGGGGAAGGTGGTGGTCACCAAAAACCCTTGTTTGCACCCTGGAGATGTGAGAGTGCTTGAGGCTGTGTATGAGGTGGCATTAGAGGAAAAGGGTCTAATGAACTGCCTGATCTTCCCGCAAAAAGGTGAAAGGCCTCATCCTAATGAATGCTCCGGTGGTGATTTAGATGGTGACTTATATTTCATAAGCTGGGATGAGAAGATAATCCCTCCACGGACAGTCGCCCCAATGGACTACACTGGATGCAGACCACGTATCATGGATCATGATGTCACTATGGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAACGACACACTGGGAACCATCTCAACCGCACACTTAGTTCTGGCGGACCGTGAGCCAGAGAAAGCGTTAAGTCCCAAGTGTCTGCGATTAGCTAGTCTTCATTCTATGGCTGTTGACTTTGCAAAGACAGGGGCACCTGCTGAGATGCCTAATGTCTTGAAACCAAGAGAGTATCCTGATTTCATGGAGAGGTGGGACAAACCCATGTACATATCAAAAGGAATACTAGGCAAGCTCTACCGCACCATAGTCGCTTCAACCATTCAAAAATCAGATTTCATTTGGTCGGAGGAAGCTGCTCAAGCTGCTTATGACCGTGACTTGGAAGTGCCCGGATTTGAGGCATTCCTTGATGTGGCAAAAGGTTGTAAAGATATGTACATAGACAAAATGAGTGCAATGCTGTCATTCTATGGAGCAACCAGTGAAGATGAGATACTGACTGGTAACCTCAGGAGCAAGTCCATGTATCTACAGAAGGATAACAGAAGGTATACAGAGATGAGGGATCGTATTTTGGTCTCTGTAAAGGGCTTAAAGAATGAGGCAAAGATTTGGTTCGAGAATAGCTGCAATTTACAAGATCGTCAGAAAATGGCATCAGCATGGTACCATGTTACTTATCACCCGTCTCATTGTCTAGACAGCGGGAATTGCCTGAGTTTCCCCTGGACTGTGGGTGATGTACTGCTTTCCATAAAAGCTGCTAACCGGAAGCAACTATTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_103681.p1 GENE.R_Transcript_103681~~R_Transcript_103681.p1 ORF type:complete len:1132 (+),score=215.91,RdRP|PF05183.8|4.4e-175 R_Transcript_103681:41-3397(+)
MAIGGRTQRERPTVKVSGIPYTAIAQDLFDFLESTIGKGTVFAINIFTERKNWKSKGYGRVQFETLEAKSKATQLAAQNKLIFKGFSLSFSSSNEDVVVRPVDPKHRTSQGDLHLGLLEKEDLMRVVDTWENVRVWVMPERNCIEFQLEFVGDCYKLEVQFDDVLESFGCFFENKPPAVLLKLKFAPKISQKISGPNLYTNFNSDRYYICKEDLAFRWVRTTDFSNKKSIGVSSAICWEIEDRSLALDIFSSLPYYMKDLKGLQLVDSDQFSCMSGLLPLVKSEEILNLDYEILFQIISLVHNHKISLAAVDTELIDFLSTLRVGTGLTVFQKMHKLSSTCYEPLSHIKTQARILGNAKSNTPSAQSRLTNDNIMSCHRALVTPTKIYCMGPELESSNYVVKNFAAYASDFMRVTFVDEDWGKLHANVVSVNIETGIFSKPFRTDIYHRIISVLREGIVIGNKRFEFLAFSASQLRSNSVWMFASNDEVKAENIRQWMGSFSKIRSVSKCAARMGQLFSSSRQTLVVPAQDVEVIPDIEVNTDGVDYCFSDGIGKISLSFARQVAQKYGLKQTPSAFQIRYGGYKGVIAVDRNSFRKLSRRRSMLKFESKNRMLNVTKACEAMPCYMNREIVTLLTTLGVEDSGLEALLQEHMRLLGSMLTSRDAALAVLDAIGIGDDGILPKMLRHGYEPSAEPYLLMMLRAYLENQLSDLKNRCRMYVPKGRILLGCLDETGILNYGQVFVRLTLRKTELECADQSVFHKVDEKTAIVVGKVVVTKNPCLHPGDVRVLEAVYEVALEEKGLMNCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKIIPPRTVAPMDYTGCRPRIMDHDVTMEEIQQFFVDYMINDTLGTISTAHLVLADREPEKALSPKCLRLASLHSMAVDFAKTGAPAEMPNVLKPREYPDFMERWDKPMYISKGILGKLYRTIVASTIQKSDFIWSEEAAQAAYDRDLEVPGFEAFLDVAKGCKDMYIDKMSAMLSFYGATSEDEILTGNLRSKSMYLQKDNRRYTEMRDRILVSVKGLKNEAKIWFENSCNLQDRQKMASAWYHVTYHPSHCLDSGNCLSFPWTVGDVLLSIKAANRKQLL*

Click here to download the sequence:
Link to NCBI Protein BLAST