Transcript Information: R_Transcript_104465.p1


Annotated TAIR IDAT3G23020.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:8177215-8179743 | Reverse length=842
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8045150099202
Replicate 22.7512393648942
Replicate 32.685617511273
Condition 2: 8 Hour
Replicate 13.0396246141408
Replicate 22.7244292817996
Replicate 33.7763695658506
Condition 3: 24 Hour
Replicate 13.747136352108
Replicate 23.5237712480348
Replicate 34.6794403123711


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_104465.p1 GENE.R_Transcript_104465~~R_Transcript_104465.p1 ORF type:complete len:870 (+),score=171.21,PPR_2|PF13041.2|1.7e+03,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|2e-06,PPR_2|PF13041.2|91,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|3.3e-12,PPR_2|PF13041.2|0.56,PPR_2|PF13041.2|5.5,PPR_2|PF13041.2|8.5e-10,PPR_2|PF13041.2|6.9e-09,PPR_2|PF13041.2|0.00077,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|8.6e-06,PPR_2|PF13041.2|0.36,PPR_2|PF13041.2|6.3e-09,PPR|PF01535.16|5.3e+03,PPR|PF01535.16|0.00056,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.72,PPR|PF01535.16|1e-05,PPR|PF01535.16|0.00073,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|21,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|0.31,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|4.7e+02,PPR|PF01535.16|6.3e-06,PPR|PF01535.16|0.023,PPR|PF01535.16|0.046,PPR|PF01535.16|0.0003,PPR|PF01535.16|1.1,PPR|PF01535.16|0.0012,PPR|PF01535.16|5.3e+03,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|0.00022,PPR_3|PF13812.2|19,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|10,PPR_3|PF13812.2|36,PPR_3|PF13812.2|0.046,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.9,PPR_3|PF13812.2|58,PPR_3|PF13812.2|0.16,PPR_1|PF12854.3|11,PPR_1|PF12854.3|3.8,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|0.00089,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|6.9e-06,PPR_1|PF12854.3|56,PPR_1|PF12854.3|4.5,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.0082,PPR_1|PF12854.3|0.00066,PPR_1|PF12854.3|0.36,PPR_1|PF12854.3|52,PPR_1|PF12854.3|71,PPR_1|PF12854.3|8.6,PPR_1|PF12854.3|1.3e+03,Clathrin|PF00637.16|1.1e+03,Clathrin|PF00637.16|2.5e+02,Clathrin|PF00637.16|8.8,Clathrin|PF00637.16|18,Clathrin|PF00637.16|17,Clathrin|PF00637.16|0.081,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|4.1e+02,TPR_19|PF14559.2|0.63,TPR_19|PF14559.2|2.7e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|43,TPR_12|PF13424.2|4e+02,TPR_12|PF13424.2|4.2e+02,TPR_12|PF13424.2|5.4e+02,TPR_12|PF13424.2|1.7e+02,TPR_12|PF13424.2|1.6e+02,TPR_12|PF13424.2|6.3e+02,TPR_12|PF13424.2|2.2 R_Transcript_104465:169-2778(+)
ATGTTCTGTAAAGCTCAATGCTTTGACATGAGCTGTTGTTTCCAGGTCCCTACCCACTTAACTCACTCAATCAGTATCAGAGTCTCAGTTTCTCCACTAGAAACACATGACTCAACCAAGAGCATTAAAGATACAAACTTTTTGGAAATACCCGACAAAGGGCTTAGAAAATTTCGCAAATTTCAAAGGCAAAACAGCAACCCAAGCCCTGTAGTTGAAAAACAGGGCACTTTGAGATTGAACCCATCTGGGTTTGTTGATAAAGTGGCTGATGACTATAGTGAGTCTGGGTTTCAATCTGTTAGTGAAAATAAGTTGAACGGTGTGGTTGAATTGAAAGAGGGGCAAAGAAAATTGAAGGGTAAGAAAGTGCACACCAAGTGTTCGACGAAATGGGCCTCTTATGGAGGGTGTATTCCATCAATATTGAGGGCTTTGGAGACTATTGATGACTTGGACGAGGCGTTTCGGCCTTGGGAAGAGAGGCTTAGTAACAAGGAGAGGAGTATCATCTTGAAGGAGCAATTGAGTTGGGAAAGAGCAATTGAGATTTTTGAGTGGTTTAAGAGGAAAGGATGCTATGAGTTGAATGTGATTCATTACAATATCATGCTTAGGATTCTAGGAAAAGCGCGTAAATGGGGTCATGTTGAGAGTTTGTGGGATGAGATGAGGGTGAAGAAGATTATGCCCATCAATTCTACTTATGGTACTCTTATTGATGTTTATAGCAAAGGTGGTCTCAAAGATAAGGCTCTCCTTTGGTTGCAAAGGATGAATGAACAAGGGATTGAGCCTGATGAGGTTACTATGGGGATTATTGTTCAAATGTACAAGAAGGCGGGAGAGTTTCGTAAAGCTGAGGAGTTCTTCAAGGTGTGGTCTTCATCCAAGTCGAAGAAAGAGGACATAATTAAAACAAAGAGTACTAATGGTGCAAAATTGAGTTCAGGGACTCACCTTAGTTTGAGCCTATATACATATAATACCCTCATCGACACATATGGAAAGGCAGGACAGATTCAAGAAATGTCTCGAACTTTGGAGAAGATGTTGGATGATGGAGTCCTTCCTGACACAATAACCTTTAACACAATGATACACATATATGGAAACAGTGACATGCTAGAAGAGGTCAATATGTTGGTGAACAAGATGGATGAACTTAAATGCACTCCTGATACAAGGACATATAATATCCTGATCTCTCTATATGCTAAGCGTGATGACATCAATGCGGCATTTAGTTACTTTAGTAAGATGAAAGAGGCTCACCTTGAGCCTGACCCTGTCAGCTATCGCACCCTCTTGTATGCGTTTTCGATAAGGCTTATAGTTCCTGAAGCAGATATGCTTGTTTCAGAAATGGATGAAAGGGGCCTTGAAATTGATGAGTTTACGCAGTCTGCCTTGACTAGAATGTATATTGATGCAGGGTTGCTTGACAAGTCATGGTCATGGTTTGAACGTTTTCATCTTGAAGGCGATATGACTTCAGAGTGCTATTCTGCTAACATTGATGCATATGGAGAACGTGGGTTTGTAGACGAGGCTGAGAAAGTGTTTCTCTGTTGCCAAGAGAGGAAAAAGATTGGTGTCGTTGTATTCAATGTGATGATCAAAGCTTATGGCGTAGGTAAGAAATACGATAAGGCATGCCTGTTGTTCAATAGCATGGAGGAGCAAGGTGTTCTTCCAGACAGATGCAGCTACGTTTCTCTGATACAATCACTGGCTGCTGCTGATTTGCCTCACATCGCGAAGCCGTATTTGTTGAAGATGCAGGAAACAGGTCTGGTGAATGATTGTGTCCCATACTCTGCTCTCATTTCAAGCTTTGCCAAATTAGGCCAATTGGAATCGGCCAAAAGCTTATACAAAGAGATGATTGGATATGATGTGCAGCCTGATGTTGTTCTGTATGGAGTACTGGTAAATGCTTTTGCAGAGAGTGGAAATGTTGGAGAAGCAATGGAATACATTGATGCCTTGAAAAAGGCAGGTCTTTCTGTGAATGCTGTAATATGCAATTCCTTAGTCAAACTTTACACGAAAGTTGGATACTTGGAAGAAGCAAGAGAAACATACAGACTGCTTCAATCATCTGATAAGGGTGTCGATGTATATTCTTCAAACTGTTTGATCGATCTCTATAGCAAACGGTCAATGATCAGAGAGGCGGAAGAGATTTTCCATGATGTTCAGGAAAGAGGTATAGCAAACGAGTTCTCATTCGCAATGATGCTGTGTATGTACAAACGTGTAGGGAGACTTGAAGAAGCCATTAACATTGCAGCGAAAATGCAGGAACTGGGTCTCCTGACGGAGCTTTTAAGCTATAATAATGTGCTTGCCCTTTTTGTTATGGATGGGAGACTGAAAGAGGCAGTAAATGCATTCAAGGAGATGATTGAACGCGAAATTGAGCCTGATGATTCTACTTACAAGTCACTTGGAGTAGCTCTTGTAAAATCCGGGGTTCCAAAGCATGCTGTTGCCAAGATGGAGGTAGAACGAAAAAAAGATGCTCATAGGGGTGTACAGGCATGGATTTCGGCTCTGACTTCTGTTGTATGCAGGGACAACTATGGCTATTGTGATGATAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_104465.p1 GENE.R_Transcript_104465~~R_Transcript_104465.p1 ORF type:complete len:870 (+),score=171.21,PPR_2|PF13041.2|1.7e+03,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|2e-06,PPR_2|PF13041.2|91,PPR_2|PF13041.2|3.5e-10,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|3.3e-12,PPR_2|PF13041.2|0.56,PPR_2|PF13041.2|5.5,PPR_2|PF13041.2|8.5e-10,PPR_2|PF13041.2|6.9e-09,PPR_2|PF13041.2|0.00077,PPR_2|PF13041.2|0.15,PPR_2|PF13041.2|8.6e-06,PPR_2|PF13041.2|0.36,PPR_2|PF13041.2|6.3e-09,PPR|PF01535.16|5.3e+03,PPR|PF01535.16|0.00056,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.72,PPR|PF01535.16|1e-05,PPR|PF01535.16|0.00073,PPR|PF01535.16|1.8e-05,PPR|PF01535.16|21,PPR|PF01535.16|1.9e+02,PPR|PF01535.16|0.31,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|4.7e+02,PPR|PF01535.16|6.3e-06,PPR|PF01535.16|0.023,PPR|PF01535.16|0.046,PPR|PF01535.16|0.0003,PPR|PF01535.16|1.1,PPR|PF01535.16|0.0012,PPR|PF01535.16|5.3e+03,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|1.1,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|0.00022,PPR_3|PF13812.2|19,PPR_3|PF13812.2|1.2e-05,PPR_3|PF13812.2|10,PPR_3|PF13812.2|36,PPR_3|PF13812.2|0.046,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.32,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.9,PPR_3|PF13812.2|58,PPR_3|PF13812.2|0.16,PPR_1|PF12854.3|11,PPR_1|PF12854.3|3.8,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|0.00089,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|6.9e-06,PPR_1|PF12854.3|56,PPR_1|PF12854.3|4.5,PPR_1|PF12854.3|2.2,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.0082,PPR_1|PF12854.3|0.00066,PPR_1|PF12854.3|0.36,PPR_1|PF12854.3|52,PPR_1|PF12854.3|71,PPR_1|PF12854.3|8.6,PPR_1|PF12854.3|1.3e+03,Clathrin|PF00637.16|1.1e+03,Clathrin|PF00637.16|2.5e+02,Clathrin|PF00637.16|8.8,Clathrin|PF00637.16|18,Clathrin|PF00637.16|17,Clathrin|PF00637.16|0.081,TPR_19|PF14559.2|5.4e+03,TPR_19|PF14559.2|4.1e+02,TPR_19|PF14559.2|0.63,TPR_19|PF14559.2|2.7e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|43,TPR_12|PF13424.2|4e+02,TPR_12|PF13424.2|4.2e+02,TPR_12|PF13424.2|5.4e+02,TPR_12|PF13424.2|1.7e+02,TPR_12|PF13424.2|1.6e+02,TPR_12|PF13424.2|6.3e+02,TPR_12|PF13424.2|2.2 R_Transcript_104465:169-2778(+)
MFCKAQCFDMSCCFQVPTHLTHSISIRVSVSPLETHDSTKSIKDTNFLEIPDKGLRKFRKFQRQNSNPSPVVEKQGTLRLNPSGFVDKVADDYSESGFQSVSENKLNGVVELKEGQRKLKGKKVHTKCSTKWASYGGCIPSILRALETIDDLDEAFRPWEERLSNKERSIILKEQLSWERAIEIFEWFKRKGCYELNVIHYNIMLRILGKARKWGHVESLWDEMRVKKIMPINSTYGTLIDVYSKGGLKDKALLWLQRMNEQGIEPDEVTMGIIVQMYKKAGEFRKAEEFFKVWSSSKSKKEDIIKTKSTNGAKLSSGTHLSLSLYTYNTLIDTYGKAGQIQEMSRTLEKMLDDGVLPDTITFNTMIHIYGNSDMLEEVNMLVNKMDELKCTPDTRTYNILISLYAKRDDINAAFSYFSKMKEAHLEPDPVSYRTLLYAFSIRLIVPEADMLVSEMDERGLEIDEFTQSALTRMYIDAGLLDKSWSWFERFHLEGDMTSECYSANIDAYGERGFVDEAEKVFLCCQERKKIGVVVFNVMIKAYGVGKKYDKACLLFNSMEEQGVLPDRCSYVSLIQSLAAADLPHIAKPYLLKMQETGLVNDCVPYSALISSFAKLGQLESAKSLYKEMIGYDVQPDVVLYGVLVNAFAESGNVGEAMEYIDALKKAGLSVNAVICNSLVKLYTKVGYLEEARETYRLLQSSDKGVDVYSSNCLIDLYSKRSMIREAEEIFHDVQERGIANEFSFAMMLCMYKRVGRLEEAINIAAKMQELGLLTELLSYNNVLALFVMDGRLKEAVNAFKEMIEREIEPDDSTYKSLGVALVKSGVPKHAVAKMEVERKKDAHRGVQAWISALTSVVCRDNYGYCDDN*

Click here to download the sequence:
Link to NCBI Protein BLAST