Transcript Information: R_Transcript_105434.p1


Annotated TAIR IDAT1G53460.1
Annotated Gene NameBEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19954558-19956509 | Reverse length=314
E-Value3.6E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.5772936250529
Replicate 23.0457596282902
Replicate 33.7470897919632
Condition 2: 8 Hour
Replicate 14.0054038339629
Replicate 25.6592355277075
Replicate 34.8180201029422
Condition 3: 24 Hour
Replicate 16.0228815257866
Replicate 23.8120200551615
Replicate 35.0665983071522


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_105434.p1 GENE.R_Transcript_105434~~R_Transcript_105434.p1 ORF type:complete len:324 (+),score=71.09 R_Transcript_105434:274-1245(+)
ATGTTCAACATCAAAGCCTTGCTTTCCCATTCTTCTTTCCGTAGTCTAAAACCTCCCTTAAACCCTTACAAATTCCCCAGAATCCCAAACCATGCACATACGCAGAGACCCATTTCTGTTTCTGCACAATTAGAAACCCCAACAAAAGTCAAGAAGAAGAATAACAACAGACCATTGGATGCCCTTTTCAAGGAAGCACTGGGGTTATGTGAAAGGACTGAGATTTTAGGAACTCAGAGTGAGAATAAGAGTGATGATGAGGATGGAGAGCTAAAGAGCAAGTTATGGGATTTGGAAATGGAGTTAAGGCAATTGAAGGTAGAAACATCAGAAGAAAAGGAGAGAAAATTTGGTGGGTCTCAGTCTAAGTTTAAGCATAAAAGCTTGCTTGCCCATATTACCAATACAGGTGGGGAGAAAGAAAATTCATTGGGAAAGAGAGAAGATGTAGTCTTGAAAGAGATGTCACCTGATATGCAAGTGTTGTTAAGGCATTTATATGATAGAGGGTACTTCAAAAATGTTAATTTTTTGCCTGGTAATGCATTTGATGTTAGTTATTTTGACAATGCCTATGCCCGTGATTTTTTAAAGTGTACTGTGGAGAGGTTTGGGGAAGATAATCAAGAAATTACCAAGTGGCTCTCAGGCAGTGATTTGAAAACAATTGCGCTGTTTGGTTGTCCTTCCCAGAGAAAGAGGGAGGTCTTTGCTGCCAAAAGGCTACGTATGTTTTTCGAGATACCAGAAGAAACTGTTTGTGGTAAATGCACCTTGAAAGAGTCTTGCAAATTTGTGAACCAGTGTGTGTGGAATGCTAACTCCAAGATGTTGAGATTGGACTTGTTGATGAGGCTCCTCAGTACATACTCCCAGGAGGATATTCCTCGTCAACTCAAGCTGACAGACGATGTTAAGGCTCGTGTCAGTCGATTGATGCATGACGTTATGAACTTGAGTAAAAGCACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_105434.p1 GENE.R_Transcript_105434~~R_Transcript_105434.p1 ORF type:complete len:324 (+),score=71.09 R_Transcript_105434:274-1245(+)
MFNIKALLSHSSFRSLKPPLNPYKFPRIPNHAHTQRPISVSAQLETPTKVKKKNNNRPLDALFKEALGLCERTEILGTQSENKSDDEDGELKSKLWDLEMELRQLKVETSEEKERKFGGSQSKFKHKSLLAHITNTGGEKENSLGKREDVVLKEMSPDMQVLLRHLYDRGYFKNVNFLPGNAFDVSYFDNAYARDFLKCTVERFGEDNQEITKWLSGSDLKTIALFGCPSQRKREVFAAKRLRMFFEIPEETVCGKCTLKESCKFVNQCVWNANSKMLRLDLLMRLLSTYSQEDIPRQLKLTDDVKARVSRLMHDVMNLSKST*

Click here to download the sequence:
Link to NCBI Protein BLAST