Transcript Information: R_Transcript_105490.p1


Annotated TAIR IDAT5G40460.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16202465-16202803 | Forward length=112
E-Value6.9E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 129.83279639911
Replicate 241.54106749031
Replicate 340.517831554485
Condition 2: 8 Hour
Replicate 132.38453105926
Replicate 244.481324092681
Replicate 336.791167762827
Condition 3: 24 Hour
Replicate 134.806998054906
Replicate 239.841757995882
Replicate 336.479507811496


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_105490.p1 GENE.R_Transcript_105490~~R_Transcript_105490.p1 ORF type:5prime_partial len:186 (-),score=8.28 R_Transcript_105490:109-666(-)
AACCCCCCCCCCCCCCCGAAACCCCCCTATTCACTCCCCCCCAAAAAAAAAGGGGAAAAAAAAGGAAAGGAAAAAAAAAGAAAAAAAAAAAAGGAAAAAAAAAACTCTCAAGTCTCAACCATGTCCACAGATCTGGAATTATTTCCTGCAAATGTCTCTAATCGTATTGGATCCCAAACAGCTGCCCCCTCAAACGACGTCGCAATGATGGCGGCTTCTTCAGATCCCGAGAACATTAATGGTGGTAGTAATAGTAGTACTACTAGTACTAGTACCAGTACCACTAGAGAAATCAAAATCGAAGACGAAGAAAAATTACAAAAAATCATTCGAGAAAGCCCCAAAACACCAACAGCAGCTGAGCATCGGATCCCGGCCCTTTCGAGCCCGCCGCCCGCCCCTCGTAAACGGCGGCGCGTGGCTGTTAATCCGCCCTGCAAACGCCGCCTCGAGTTCCTCATCCCCGATACCGATCAAGAAATCCAAGATTTCTTCACCTCTAGCTTCGCCAAAATTGAATCTACCCGAATTCTCAAGCGCCGTTGTCCTTGCGTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_105490.p1 GENE.R_Transcript_105490~~R_Transcript_105490.p1 ORF type:5prime_partial len:186 (-),score=8.28 R_Transcript_105490:109-666(-)
NPPPPPKPPYSLPPKKKGEKKGKEKKRKKKKEKKNSQVSTMSTDLELFPANVSNRIGSQTAAPSNDVAMMAASSDPENINGGSNSSTTSTSTSTTREIKIEDEEKLQKIIRESPKTPTAAEHRIPALSSPPPAPRKRRRVAVNPPCKRRLEFLIPDTDQEIQDFFTSSFAKIESTRILKRRCPCV*

Click here to download the sequence:
Link to NCBI Protein BLAST