Transcript Information: R_Transcript_10550.p1


Annotated TAIR IDAT3G01180.1
Annotated Gene Namestarch synthase 2
Annotated Gene Symbol(s)AtSS2, SS2
Annotation TypeOrtholog
Chromosome Positionchr3:62456-65678 | Reverse length=792
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.0898925712889
Replicate 24.6917658954938
Replicate 35.9387838212247
Condition 2: 8 Hour
Replicate 18.5247085371891
Replicate 28.475050278079
Replicate 310.980603955543
Condition 3: 24 Hour
Replicate 18.5595775095884
Replicate 27.6512688250027
Replicate 39.2955190275218


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_10550.p1 GENE.R_Transcript_10550~~R_Transcript_10550.p1 ORF type:complete len:810 (+),score=182.79,Glyco_transf_5|PF08323.7|4.1e-64,Glycos_transf_1|PF00534.16|8.8e-16,Glyco_trans_1_4|PF13692.2|3.2e-08 R_Transcript_10550:396-2825(+)
ATGGCATCTCTAAATTCGTTCCCTTTTACCATTGAAGCAAGAATGGAGAACAGGGTTCTGCTTCATTCCTCTTATGGGTCTCATCTTTTGGCATATCAAAAGAAAAAGCCTTTGGATTGGGGTGGTTTGGTTGATTCAAGGACAAGTCTTGTGAAGTTTATGGAGCAAAATTGTAGTAGTAACAGTAATGGAAAATCAACATCTTTTGGTAGATGTTTAAGGAGGAGTAAGCTTGTGAGAGCAACAGCAAAGGATTCTGGTGAAGGTGAAGATGAACAAGAGGGTGAAGATGCAATCCAGGCTACTATTGAGAAGAGCAAGAAGGTTCTAGCTATGCAGCAAGAGCTACTTCAACAGATTGCCGAAAGGAGGAAGCTAGTGTCCTCTATCAAGAGTAGTATAGTCAACCCCGATAATAAAATCTCTGCTAAGGATAGTGGCAACTCTTCTCCTGAGGTTGATATTAATCATAACAGTGTGGTTGATCAGTTCCCCAGCATTGTTGCTTCTAGAAGAAAAGTTGATTCAGTTCCCAACACTAAAGATCAAACCCCTGTTTTTCCTGTCAGTTCAACTGAAAGGGAAAGAGAACAAGTAAAAGCAGTAAAACTTCCATCCAAAACTCGAAATCTGGATTTGTCTACCCGGAAAGATGTGACAACTAGGGTACCAGAAAAAACCCCCCGTCAGTTAGATGGACTTTCAGTTGAAGGCAAAAGAGAAACCACCAAGAGTTTATCACTTGAAAAGCCTGCTTCCATTGTGGATTCACAGAGGAAAACTGAAGAGATTGCGAATGTACCTGAATTTTTATCAAATACTTATAGGTCTAGTCCTCAGGATAAAAAGGATCAAGAGTCGGAAAAGTCGACTGCCAAGGAGACGAGTGATCAGGTGAATGATCCTGTTGGGGAAGAGGAGAAGCCACCTCCTCTTGCCGGAGCCAATGTAATGAATGTCATCTTGGTAGCTGCAGAATGTGCTCCATGGTCTAAAACAGGTGGGCTTGGAGATGTTGCTGGGGCCTTGCCAAAGGCTTTGGCTCGGCGTGGGCATAGAGTAATGGTTGTGGTACCTCGATATGGAGAATATGCTGAGACTCAAGAGACGGGAGTCAGGAGGAGATACAAAGTTGATGGCCAGGATATGGAAGTATGTTACTTTCAAACGTATATAGATGGCGTGGACTTTGTATTTATTGACAGCCCTATATTTCGCCATATTGGGAATAACATATATGCGGGAAGCAGACTGGATGTTCTGAAACGAATGATTCTCTTCTGCAAGGCTGCAGTTGAGGTTCCTTGGTATGTACCATGTGGAGGTGTGTGCTATGGAGATGGAAATTTGGTGTTTATTGCTAATGACTGGCATACTGCACTGCTACCGGTGTATTTGAAAGCATACTATCGAGACAATGGTTTGATGAAGTATACACGATCGGTCCTTGTCATCCACAACATAGCACACCAGGGCCGTGGTCCAGTGGATGATTTCTCTTATGTGGATCTTCCACCACACTACATTGACTACTTTAAATTGTACGACCCAGTTGGTGGAGAGCATTTTAATATATTTTCAGCAGGTCTCAAAGCCGCTGATCGTATAGTTACTGTTAGTCATGGGTATGCATGGGAGCTGAAAACTCAGGAGGGTGGTTGGGGACTTCATGAGATCATTAATGCAAACGATTGGAAACTGAGAGGGATAGTGAATGGAATTGACTCAAAAGAGTGGAATCCTGAGGTTGATGTTCATCTAAAATCTGATGGCTACACAAACTACTCTCTCGAGTCACTTAAACCAGGAAAATCACAGTGCAAGGCAGCTTTACAAAAGGAGCTCGGTTTACCTCTTCGAGAGGATGTTCCACTGATTGGTTTCATTGGTAGGCTTGATCACCAGAAAGGCGTTGATATCATAGCAGAAGCAATACCTTGGATGATGGGTCAAGATGTGCAGTTAGTCATGTTGGGAACTGGGAGACCCGACCTAGAACAGATGCTTAGGCAGTTTGAAAGCCAGCACCCGGATAAAATACGAGGATGGGTAGGGTTTTCAGTGAAGGCAGCCCACCGTATAACAGCTGGAGCAGATATTTTGCTCATGCCATCAAGATTTGAGCCATGTGGCCTTAATCAGCTTTACGCAATGAGCTATGGTACGATTCCAGTAGTCCATGCTGTTGGTGGGCTGAGAGATACGGTGCAACCTTTTGATCCGTTCAATGACACTGGCCTTGGCTGGACATTTGACCGGGCTGAGGCAAACCGTCTGATAAATGCTTTAGGAAACTGCTTGTTGACATATCATCAGTACAAACAGAGCTGGGAAGGTCTCCAAACACGAGGAATGACACAAGACCTGAGTTGGGATAATGCTGCCCACAACTACGAGGAAGTCCTTGCTGCTGCCAAGTACCAGTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_10550.p1 GENE.R_Transcript_10550~~R_Transcript_10550.p1 ORF type:complete len:810 (+),score=182.79,Glyco_transf_5|PF08323.7|4.1e-64,Glycos_transf_1|PF00534.16|8.8e-16,Glyco_trans_1_4|PF13692.2|3.2e-08 R_Transcript_10550:396-2825(+)
MASLNSFPFTIEARMENRVLLHSSYGSHLLAYQKKKPLDWGGLVDSRTSLVKFMEQNCSSNSNGKSTSFGRCLRRSKLVRATAKDSGEGEDEQEGEDAIQATIEKSKKVLAMQQELLQQIAERRKLVSSIKSSIVNPDNKISAKDSGNSSPEVDINHNSVVDQFPSIVASRRKVDSVPNTKDQTPVFPVSSTEREREQVKAVKLPSKTRNLDLSTRKDVTTRVPEKTPRQLDGLSVEGKRETTKSLSLEKPASIVDSQRKTEEIANVPEFLSNTYRSSPQDKKDQESEKSTAKETSDQVNDPVGEEEKPPPLAGANVMNVILVAAECAPWSKTGGLGDVAGALPKALARRGHRVMVVVPRYGEYAETQETGVRRRYKVDGQDMEVCYFQTYIDGVDFVFIDSPIFRHIGNNIYAGSRLDVLKRMILFCKAAVEVPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPPHYIDYFKLYDPVGGEHFNIFSAGLKAADRIVTVSHGYAWELKTQEGGWGLHEIINANDWKLRGIVNGIDSKEWNPEVDVHLKSDGYTNYSLESLKPGKSQCKAALQKELGLPLREDVPLIGFIGRLDHQKGVDIIAEAIPWMMGQDVQLVMLGTGRPDLEQMLRQFESQHPDKIRGWVGFSVKAAHRITAGADILLMPSRFEPCGLNQLYAMSYGTIPVVHAVGGLRDTVQPFDPFNDTGLGWTFDRAEANRLINALGNCLLTYHQYKQSWEGLQTRGMTQDLSWDNAAHNYEEVLAAAKYQW*

Click here to download the sequence:
Link to NCBI Protein BLAST