Transcript Information: R_Transcript_105879.p1


Annotated TAIR IDAT4G15560.1
Annotated Gene NameDeoxyxylulose-5-phosphate synthase
Annotated Gene Symbol(s)CLA1, DEF, CLA, DXS, DXPS2
Annotation TypeOrtholog
Chromosome Positionchr4:8884218-8887254 | Forward length=717
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 139.282428646212
Replicate 225.225132753665
Replicate 330.940227260155
Condition 2: 8 Hour
Replicate 138.142769903737
Replicate 254.044046816161
Replicate 363.121586791177
Condition 3: 24 Hour
Replicate 148.082055419149
Replicate 232.803314631619
Replicate 343.898720386115


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_105879.p1 GENE.R_Transcript_105879~~R_Transcript_105879.p1 ORF type:complete len:710 (+),score=163.64,DXP_synthase_N|PF13292.2|2.6e-113,Transket_pyr|PF02779.20|1.2e-44,Transketolase_C|PF02780.16|1.8e-31,TPP_enzyme_C|PF02775.17|5.2e-05,TPP_enzyme_C|PF02775.17|77,TPP_enzyme_C|PF02775.17|1.6e+03 R_Transcript_105879:451-2580(+)
ATGGCTCTTTGTTCTTGCTCATTTCCTGCACATTTTACACCAGCAGTATCTTCAGATCTCTTCAGGTCATGGAGAGTGGATCTCCACAATCAATCTCAACTGAAGTATCATCAGGTTAAGAGAAGGACTTTTGGAATCTGGGCATCATTGGCAGAAAGAGGGGATTATTACTCAGAAAGACCACCCACTCCCCTTTTGGATACCATCAACTATCCTATTCACTTGAAAAATCTCTCTACTAAGGAACTTAAACAACTCGCGGATGAATTGCGTTCTGAAGTGATCTTTAATGTATCTAAAACCGGGGGTCATCTTGGTTCAAGCCTGGGCGTTGTTGAGCTTACGGTCGCTCTTCATTTTGTCTTCAATGCTCCTCAGGATAGGATTTTGTGGGATGTTGGTCACCAGACTTACCCTCACAAGATCCTGACTGGAAGAAGAGAAAAGATGAGAACATTGAGGCAGACTAATGGGTTGTCAGGATTTACAAAGCGTACAGAGAGTGAATATGATTCCTTTGGTGCGGGTCATAGCTCCAACAGTATATCAGCTGGATTGGGTATGGCTGTAGGGAGGGATCTCAAGGGCAGACAAAACAATGTAGTTGCCGTGATAGGAGATGGTGCCATGACAGCAGGACAAGCTTTCGAAGCCATGAATAATGCAGGATACTTGGATTCTGACATGATTGTAATTCTCAATGACAACAAGCAGGTTTCTTTACCAACTGCCACTCTAGATGGGCCTGTTCCTCCAGTTGGAGCTCTTAGCAGTGCTTTAAGCAGATTGCAATCAAATAGACCTCTACGAGAACTTAGGGAGGTTGCCAAGGGTGTAACAAAGCAAATTGGAGGGCCCATGTACCAGCTAGCTGCCAAAGTCGACGAGTATGCTCGTGGGATGATCAGTGGTTCAGGATCAACTTTGTTTGAAGAGCTTGGACTGTACTACATTGGTCCTGTAGATGGTCATAATGTAGACGATCTTGTTGCTATTCTTAAAGAGGTTAAAAGCACAAAAACAACAGGTCCAGTGCTTATCCATGTTGTGACTGAGAAAGGAAGAGGATACCCATATGCAGAGAAGGCTGCAGACAAATATCATGGAGTAGTGAAGTTTGATCCAGCCACTGGGAAGCAATTTAAAGGGGGTTCCAATACTCAGTCTTATACAACTTACTTTGCAGAGGCCTTGGTTGCAGAAGCAGAAGCCGACAAAGATATTGTTGCAATCCATGCCGCTATGGGTGGTGGAACGGGCTTAAATCTCTTTCAGAGGCGCTTTCCATCTAGGTGCTTTGATGTTGGAATAGCTGAACAACATGCAGTAACTTTTGCTGCTGGATTAGCTTGTGAAGGTCTTAAACCATTTTGTGCAATATACTCATCTTTCATGCAAAGGGCATATGATCAGGTAGTGCATGATGTAGATTTACAAAAGCTACCAGTGAGGTTTGCTATGGACAGAGCAGGTTTGGTAGGAGCCGATGGTCCTACTCATTGTGGCTCATTTGACGTAACATTTATGGCTTGCCTTCCAAATATGATAGTAATGGCCCCTTCGGATGAGGCAGAACTTTTCCATATGGTGGCCACAGCAGCTGCTATCAATGATAGACCATCTTGCTTCCGTTACCCTAGAGGAAATGGCATTGGTGTGCCATTGCCACCAACAAACAAAGGCACACCACTTGAGATTGGGAAGGGTCGAATTTTGATAGAGGGAGAGAGAGTTGCACTACTAGGCTATGGATCAGCAGTTCAGAACTGTTTGGCTGCAGCAGCTTTGGTTGAAACCCGTGGCTTACGTGTGACTGTAGCAGATGCCCGTTTCTGTAAACCATTAGATCATGCACTTATCCGTAGTCTTGCAAAGTCACATGAGGTTCTAATTACAGTAGAAGAAGGATCAATTGGAGGTTTTGGTTCTCATGTTGCTCAATTCATGGCTCTTGATGGTCTTCTAGATGGCAAACTAAAGTGGAGACCATTGGTCCTTCCTGATCGATACATTGAGCATGGCTCGCCTGCAGATCAGTTGGCAGAAGCTGGCCTTACACCTGGTCATATTGCTGCTACTGTGTTCAATATCCTTGGGCAAACAAGAGAGGCTCTTGAAGTTATGTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_105879.p1 GENE.R_Transcript_105879~~R_Transcript_105879.p1 ORF type:complete len:710 (+),score=163.64,DXP_synthase_N|PF13292.2|2.6e-113,Transket_pyr|PF02779.20|1.2e-44,Transketolase_C|PF02780.16|1.8e-31,TPP_enzyme_C|PF02775.17|5.2e-05,TPP_enzyme_C|PF02775.17|77,TPP_enzyme_C|PF02775.17|1.6e+03 R_Transcript_105879:451-2580(+)
MALCSCSFPAHFTPAVSSDLFRSWRVDLHNQSQLKYHQVKRRTFGIWASLAERGDYYSERPPTPLLDTINYPIHLKNLSTKELKQLADELRSEVIFNVSKTGGHLGSSLGVVELTVALHFVFNAPQDRILWDVGHQTYPHKILTGRREKMRTLRQTNGLSGFTKRTESEYDSFGAGHSSNSISAGLGMAVGRDLKGRQNNVVAVIGDGAMTAGQAFEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMYQLAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVVKFDPATGKQFKGGSNTQSYTTYFAEALVAEAEADKDIVAIHAAMGGGTGLNLFQRRFPSRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMIVMAPSDEAELFHMVATAAAINDRPSCFRYPRGNGIGVPLPPTNKGTPLEIGKGRILIEGERVALLGYGSAVQNCLAAAALVETRGLRVTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIEHGSPADQLAEAGLTPGHIAATVFNILGQTREALEVMS*

Click here to download the sequence:
Link to NCBI Protein BLAST