Transcript Information: R_Transcript_106048.p1


Annotated TAIR IDAT1G08610.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:2733788-2735467 | Reverse length=559
E-Value1.1E-193
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.928471863689
Replicate 214.511094997612
Replicate 317.355958178655
Condition 2: 8 Hour
Replicate 116.128914453305
Replicate 219.766103743574
Replicate 321.34208142909
Condition 3: 24 Hour
Replicate 123.271224391222
Replicate 221.377793600423
Replicate 325.510754780121


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106048.p1 GENE.R_Transcript_106048~~R_Transcript_106048.p1 ORF type:complete len:586 (+),score=116.36,PPR_2|PF13041.2|10,PPR_2|PF13041.2|14,PPR_2|PF13041.2|1.5e-16,PPR_2|PF13041.2|4.4e-11,PPR_2|PF13041.2|0.024,PPR_2|PF13041.2|5.6e-12,PPR_2|PF13041.2|1.4e-16,PPR_2|PF13041.2|2.8e-16,PPR_2|PF13041.2|7.3e-14,PPR_2|PF13041.2|3.9e-14,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|1.1e-05,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|4.4e-09,PPR_1|PF12854.3|6.1e-11,PPR_1|PF12854.3|65,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|8.3e-08,PPR_1|PF12854.3|4.9e-10,PPR_1|PF12854.3|4.9e-12,PPR_1|PF12854.3|6.9e-09,PPR_1|PF12854.3|4.6e-07,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|43,PPR|PF01535.16|12,PPR|PF01535.16|12,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|3.9e+03,PPR|PF01535.16|0.091,PPR|PF01535.16|0.00025,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|9.8e-07,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.0054,PPR|PF01535.16|4.3e+02,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|61,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|0.057,PPR_3|PF13812.2|1.4e-05,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|10,PPR_3|PF13812.2|5.6e+03 R_Transcript_106048:1186-2943(+)
ATGGTGCCTACTGGTGCGCTGCAGAACTCTATAGTTGAGGTGCCTTGTTTCCATAGAGGGAATTCATGCTGTCAAAGAAAGGAAGGTTGTGGTACTTTGGTGGAAAGTAAATTACGAAAAACGTACAAGTGTGGCTTGGGTTCCGCATCCAAATGTACTGCCAATTTTCAGTTTTGTCTAAAAGCTGAAGAATTCAGCTCTAGAAGAAATATTTCTTGTTCAACTTGTAGAGCTCAGCGATTTAATGTTTGCATTGATGATGTTGATGAGGTTGGTTATAAGGAATGGAAAGGGAGTTCAAAGAGAGATGCTATTGGTTTCCAGAAGAATAGAAGGCAAATGAGTTTGGAGAGACCTGGCTTATCATTTGATGGACCTTTTGTGAAGAATGACGAGGCTGCTAACAATGATATTCTTCAAAAATTTTGCAGCTTAGGAAAGCTGTTTGAAGCATCAAGGTTAGTAGAGGTCATGTCCCGTCGAAGCCAGATTCCTCACTTCCCTTCTTGCATAAATTTGATACGTGGTTTCATCAAACAAGATCAGGTCGATAAAGCTGCAAAAGTTCTGGGCATCGTGGTCATGTCAGGTGGTGTTCCCGACATTATTACACACAACATGCTGATTAGTGGATTGTGCAAGAGAGGGCAGTTGAAATCTGCCATTGACCACTTGGAAGATATGAGCTCTAGTGGCTGCCCTCCAGATGCAATTACTTATAACACAATAATCAGGTGCTTCTGTGATAACGGCAGGTTTGATCAGGCGGTTGGGTTTTGGAAGGAGCAACTCAGAAAGGGATGTCCTCCTTATCTTATCACATATATGATTTTATTGGAGCTTGTTGTCAAGCGTTATGGGATAGGCAGGGCTCTGGAAGTGTTGGATGATTTGGCAGTTGAGGGCTGTTACCCTGACCTTATTGCCTATAACTTATTGATTAATTCAACTTGTAAAGAAGGTAATTTTGATGGCATGGTTTTGGTAATGAATAATTTAGTATCATATGGCTGGGAGCCAGATGTTGTGACTTACAACACTATACTTCATGCTTTATGCAACCATGGTTACTGGGGTGAAGCTGATGACATTTTGTCCGTAATGAATCAGACTTCCCACCCACCAACTGTGGTTACTTATAACATCATAATCAATGGTTTGTGCAAGCACAGGCACCTGGATCTTGCAATTGACTTTCTCATCCAGATGGTCAATAGGAAATTGTGTCCCGACATAATCACTTACAATACTTTAATAGATGCAGTTTGTAAGGAAGGTATGGTAGATGAGGCTTTTGGTGTTTTTCAACTTTTAGGTGATGGAAATTGCTCTCCTGGTTTGATTACTTATAATATTATCATTGATGGTTTGGCTAAGAAGGGCTTTATGGAGAAAGCAATGCAAGTATATGGTGAGATGATTGAAAAGAGGATTACTCCAGATGATATAACTCATCGTTCTTTGGTCTGGGGCTTTTGTCGGGCAGATGAAGTTGATAAAGCTGTGGAGATACTTAAAGAGATGGGTAGAAGAAACCACAAGACCAGAAATAGTGCTTATAGGTTCATGATCCAGGAGTTGTGTAAAAATGGGAAGGTGGATATTGCAATACAAGTTCTAGAAATCATGATATCCAATCAAATAAACCCTGATGCAAACATCCATACCAATTTGATTAAAGGGATAGCTGCTGGTGGTATGATTAAAGAGGCTCAGCAACTTTCTTCCAAGTTGAATGGAAAATTATCGAAGATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106048.p1 GENE.R_Transcript_106048~~R_Transcript_106048.p1 ORF type:complete len:586 (+),score=116.36,PPR_2|PF13041.2|10,PPR_2|PF13041.2|14,PPR_2|PF13041.2|1.5e-16,PPR_2|PF13041.2|4.4e-11,PPR_2|PF13041.2|0.024,PPR_2|PF13041.2|5.6e-12,PPR_2|PF13041.2|1.4e-16,PPR_2|PF13041.2|2.8e-16,PPR_2|PF13041.2|7.3e-14,PPR_2|PF13041.2|3.9e-14,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|1.1e-05,PPR_1|PF12854.3|2.3,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|4.4e-09,PPR_1|PF12854.3|6.1e-11,PPR_1|PF12854.3|65,PPR_1|PF12854.3|2.4e-05,PPR_1|PF12854.3|8.3e-08,PPR_1|PF12854.3|4.9e-10,PPR_1|PF12854.3|4.9e-12,PPR_1|PF12854.3|6.9e-09,PPR_1|PF12854.3|4.6e-07,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|43,PPR|PF01535.16|12,PPR|PF01535.16|12,PPR|PF01535.16|1.3e-05,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|3.9e+03,PPR|PF01535.16|0.091,PPR|PF01535.16|0.00025,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|9.8e-07,PPR|PF01535.16|1.1e-08,PPR|PF01535.16|0.00017,PPR|PF01535.16|0.0054,PPR|PF01535.16|4.3e+02,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|61,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|0.029,PPR_3|PF13812.2|0.057,PPR_3|PF13812.2|1.4e-05,PPR_3|PF13812.2|0.63,PPR_3|PF13812.2|10,PPR_3|PF13812.2|5.6e+03 R_Transcript_106048:1186-2943(+)
MVPTGALQNSIVEVPCFHRGNSCCQRKEGCGTLVESKLRKTYKCGLGSASKCTANFQFCLKAEEFSSRRNISCSTCRAQRFNVCIDDVDEVGYKEWKGSSKRDAIGFQKNRRQMSLERPGLSFDGPFVKNDEAANNDILQKFCSLGKLFEASRLVEVMSRRSQIPHFPSCINLIRGFIKQDQVDKAAKVLGIVVMSGGVPDIITHNMLISGLCKRGQLKSAIDHLEDMSSSGCPPDAITYNTIIRCFCDNGRFDQAVGFWKEQLRKGCPPYLITYMILLELVVKRYGIGRALEVLDDLAVEGCYPDLIAYNLLINSTCKEGNFDGMVLVMNNLVSYGWEPDVVTYNTILHALCNHGYWGEADDILSVMNQTSHPPTVVTYNIIINGLCKHRHLDLAIDFLIQMVNRKLCPDIITYNTLIDAVCKEGMVDEAFGVFQLLGDGNCSPGLITYNIIIDGLAKKGFMEKAMQVYGEMIEKRITPDDITHRSLVWGFCRADEVDKAVEILKEMGRRNHKTRNSAYRFMIQELCKNGKVDIAIQVLEIMISNQINPDANIHTNLIKGIAAGGMIKEAQQLSSKLNGKLSKI*

Click here to download the sequence:
Link to NCBI Protein BLAST