Transcript Information: R_Transcript_106170.p1


Annotated TAIR IDAT5G42905.1
Annotated Gene NamePolynucleotidyl transferase, ribonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:17201414-17202323 | Reverse length=258
E-Value6E-40
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9951769906392
Replicate 21.6821360372131
Replicate 32.631179318477
Condition 2: 8 Hour
Replicate 11.8908003820267
Replicate 22.4605603570417
Replicate 33.626817952143
Condition 3: 24 Hour
Replicate 12.2824846954185
Replicate 21.5753756350412
Replicate 32.9366708025856


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106170.p1 GENE.R_Transcript_106170~~R_Transcript_106170.p1 ORF type:complete len:1036 (+),score=114.96,RVT_1|PF00078.23|3.2e-43,RVT_3|PF13456.2|1.6e-17,zf-RVT|PF13966.2|2.8e-16 R_Transcript_106170:2025-5132(+)
ATGATGGCATATCAGAAAGCAAGATATGATAAAATTCAGTTTGGTGACAGGAATACATCATTCTTCCACACCATGACCCTCATTCGAAGGAGGAAAAACAAGGTGGAAGGCCTCTTAAATGACCAGGATGAGTGGGTTTGGGACCCGAATCAATTACGGGATATGGCAACGGACTTTTACAGGAAGCTATACCAGAAAGATGAGGCACTCCACTTGAACGTTCTTCCAAACCTTTGTTTTCCGGTCTTAACAAAGGATCTTCTGGACCCTCTTTTTGAACCATATTCTTGTGAAGAGATCAGAAAGGCACTTTTTGCTATGGCTCCTCATAAAGCCCCGGGTCCCGACGGATTCCATGCGGTCTTCTTTCAAAAGATGTGGGACGTAGTGGGGAAATCCATATGTGATTTTGCACTTGAATTCTTCAGGCTCAATCACTTACCAGAAGGGATGAATGATACTCTCCTGGTTCTTATACCCAAGGTCCCTGACCCTGAGAGACTCACGCAGATGAGGCCCATTTCTCTGTGCAACGTGACTTACAAAATACTCACCAAGGTGTTGGCTAACCGAATTAAGGGTATTCTTCCTAAGCTCATATCCCCAGCTCAAGCAAGCTTTGTTCCAGGCCGACAAATATCAGACAATATTGTGATAACGCAAGAGGTTATTCATGCTATGAAGAAGCGAACAATTGGGGCAGGATGGATGGAAATAAAAATCGATCTCGAGAAGGCATATGATCGGCTCAAGTGGGAATCTATCTATGATACCCTTATGGATCTTCCTTTTCCAGTAAGCATGATTGGTGCAATTATGTCTTGCGTTCAAGGAGCGCGAATGCGACTGTTATGGAATGGGGAAAAGACTGACATCTTTGAGCCCACCAGAGGTATTCGTCAAGGAGACCCTCTCTCCCCTTACCTCTTTGTCCTTTGCATGGAGCGACTAGCTCATCGTATTCAAATGTCAGTGGACGATAAGAAATGGAAGACTATTCGACTGTCGCGAAAATCGCCTCCCTTGAGTCACCTCTTTTTTGCTGACGACCTCATTCTTTTTGCTGAGGCTGGCCCTGATCAAGTGGATGTGATTCTCACATGTCTCGAGGATTTCTGCATCTCCTCCGGGCAAAAAGTAAATAAGCAAAAGTCAGCTATTTATTTCTCTAAAGGAGTATCCTCACATCTGCGACAACAAGTGAGTGACGGGTTGGGTATCCCCATAACTGATAACTTGGGAAATTATCTTGGAGTTCCCATCTTACATAATCGAGTGGGCAAGAACTCATACAAGTACATCATTGATAAGGTCAACAAACGCCTGGCGGGTTGGAAAGCCCAGCATCTTAGCTTTGCAGGGCGCCTCACTTTGGTGAAATCCGTCACTTCCACAATCCCTAATCATGTGATGCAAACAGTTCATCTACCCATCTCGGTTTGCAACGAGCTGGACCAGAAAAATCGCGACTTCCTTTGGGGGGATATGCAGGATAAGAAGAGGCCTCACTTAGTCAATTGGAATCAGATTTGTCGTCCAAAATCTGTTGGTGGGTTGGGTCTTCGCTCGGCCCGACAAGCTAACAGAGCATTGCTCTCAAAGCTGGGATGGAGATTGTTGAAGGAACCTGAAGCCCTTTGGTCACGAGTGCTCAAGGCCAAATATGGGGGTGACCGTAGCGGGGTATATATGTTCAAACCAATTGTTGGGGCCTCACCAGTTTGGAGGGGGCTAAATAAATGTACTCCAATTTTACAACAAGGAGTAGGGTGGAATGTTACCAATGGCAGCGTTGCTCGCTTTTGGCTTGACAAATGGATGGGGCCTGATACTCTTCTTTCTCAAGCCACTTGTGAGATCGAGGAGGAAGAGCGCCAGTGTAGAGTGGCAGATTACTGGGATGACTCTCAAGGATGGAAGTGGGAGGCTTGCAGCGCCAAACTCCCTGCCATCACCCTTTTAAAAATAGCAGCCATCCACCTCAGACTGAACTCCCCCACGCCAGACACTACGGTATGGATGCGTAGCACTAAGGGCTGCTTCTCAACCTCCTCAGCTTTTGATATTATCAGGCCTCGAGACAAAGACATTGTGGATCGCATCTGGAAAAGTATATGGGAGGTGTCTTGCCCAGAAAGATTTCGCACCTTTGCATGGCTAGTGGCGCATGATAGGATACTTACAAATGCCGCTCGTTGTTCTCGTGGGATGACGGACTCTCCCAATTGTACTTACTGTGAGGGTCATTGGGAAGATACCCTCCATGTCTTGCGAGATTGTTTTGCTGCTTCATCTATATGGAACAAATTGGTTGCCCCTAATGCCCGAGTGGATTTCTACACTTGGAACCTTAGAGATTGGATGTACAGGAACTGTACTTCACAGTTGGGGGTTAATCCTTGTTGGGACTGGCCCAGAGTGTTTCTAACCGCAATGTGGTTCATCTGGAGATGGAGATGCTACAGAGTCTTTGGGGGACATATGCACATCCCCTTCAATCAAATTAGCTTCTTATACAAGCAATTCCAGGACATTTCCAAGGCCCTGGATGGGGATGAACGTGATACAGGACCACCCAAGATTTTGACTTTCATCCGATGGCAGTACCCACCATCCTCGTGGGTAAAATTAAATACAGATGGCGCGGCGAAGGGCAATCCAGGAGCGGCAAGTGCAGGAGGGGTTGCTCGAGACTCATTGGGTCAGTGGATTCAAGGCTTTGCACACCACATTGGTGTGTGCACCTCGGTGGCTGCTGAGTTATGGGGTGTATTCACAGGGTTGAAAATGGCATGGGATCTGGGCTTTAGGAAACTAATCCTTGAAGTGGACTCAATGGTAGTCAGGAGCATGGTTTCGGAAGACATTGACTGGAGTGGACCGAATGCTACTCTTATAGCTCTTTGCCAGCAGGAGCTTGGGAAGGAATGGGAGATACAAGTCGAGCATGTATATCGCGAAGCTAATGGAGTAGCTGATGCACTAGCAAACAAGGCTTTGGAATTGGAACATGGGGTACACTTCTTTGATAGTCCTCCTTCAGGAGTTGCTTCTTTGGTTTTTCAAGACCTGAGCGGGGTGTCTTTCCCTCGCCTAATTAGAATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106170.p1 GENE.R_Transcript_106170~~R_Transcript_106170.p1 ORF type:complete len:1036 (+),score=114.96,RVT_1|PF00078.23|3.2e-43,RVT_3|PF13456.2|1.6e-17,zf-RVT|PF13966.2|2.8e-16 R_Transcript_106170:2025-5132(+)
MMAYQKARYDKIQFGDRNTSFFHTMTLIRRRKNKVEGLLNDQDEWVWDPNQLRDMATDFYRKLYQKDEALHLNVLPNLCFPVLTKDLLDPLFEPYSCEEIRKALFAMAPHKAPGPDGFHAVFFQKMWDVVGKSICDFALEFFRLNHLPEGMNDTLLVLIPKVPDPERLTQMRPISLCNVTYKILTKVLANRIKGILPKLISPAQASFVPGRQISDNIVITQEVIHAMKKRTIGAGWMEIKIDLEKAYDRLKWESIYDTLMDLPFPVSMIGAIMSCVQGARMRLLWNGEKTDIFEPTRGIRQGDPLSPYLFVLCMERLAHRIQMSVDDKKWKTIRLSRKSPPLSHLFFADDLILFAEAGPDQVDVILTCLEDFCISSGQKVNKQKSAIYFSKGVSSHLRQQVSDGLGIPITDNLGNYLGVPILHNRVGKNSYKYIIDKVNKRLAGWKAQHLSFAGRLTLVKSVTSTIPNHVMQTVHLPISVCNELDQKNRDFLWGDMQDKKRPHLVNWNQICRPKSVGGLGLRSARQANRALLSKLGWRLLKEPEALWSRVLKAKYGGDRSGVYMFKPIVGASPVWRGLNKCTPILQQGVGWNVTNGSVARFWLDKWMGPDTLLSQATCEIEEEERQCRVADYWDDSQGWKWEACSAKLPAITLLKIAAIHLRLNSPTPDTTVWMRSTKGCFSTSSAFDIIRPRDKDIVDRIWKSIWEVSCPERFRTFAWLVAHDRILTNAARCSRGMTDSPNCTYCEGHWEDTLHVLRDCFAASSIWNKLVAPNARVDFYTWNLRDWMYRNCTSQLGVNPCWDWPRVFLTAMWFIWRWRCYRVFGGHMHIPFNQISFLYKQFQDISKALDGDERDTGPPKILTFIRWQYPPSSWVKLNTDGAAKGNPGAASAGGVARDSLGQWIQGFAHHIGVCTSVAAELWGVFTGLKMAWDLGFRKLILEVDSMVVRSMVSEDIDWSGPNATLIALCQQELGKEWEIQVEHVYREANGVADALANKALELEHGVHFFDSPPSGVASLVFQDLSGVSFPRLIRM*

Click here to download the sequence:
Link to NCBI Protein BLAST