Transcript Information: R_Transcript_106445.p1


Annotated TAIR IDAT4G13650.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:7939611-7942898 | Reverse length=1064
E-Value5E-125
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1625363120853
Replicate 21.4584586134519
Replicate 33.0622375292366
Condition 2: 8 Hour
Replicate 13.1770650455797
Replicate 23.1064921037558
Replicate 33.9253155338976
Condition 3: 24 Hour
Replicate 14.2124416931567
Replicate 23.266375169902
Replicate 33.2989332096896


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106445.p1 GENE.R_Transcript_106445~~R_Transcript_106445.p1 ORF type:complete len:763 (+),score=116.77,PPR_2|PF13041.2|0.00039,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|7.9e+02,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|3.7e-06,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|0.099,PPR_2|PF13041.2|0.00023,PPR_2|PF13041.2|6.2,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.001,PPR|PF01535.16|6e+02,PPR|PF01535.16|26,PPR|PF01535.16|0.00015,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.013,PPR|PF01535.16|16,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.017,PPR|PF01535.16|2e-08,PPR|PF01535.16|0.00068,PPR|PF01535.16|0.026,PPR|PF01535.16|22,PPR|PF01535.16|35,PPR|PF01535.16|6.9e+03,PPR|PF01535.16|6e+03,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.00052,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|0.0075,PPR_3|PF13812.2|4.3e+03,PPR_3|PF13812.2|0.046,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.99,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.085,PPR_3|PF13812.2|17,PPR_3|PF13812.2|64,PPR_3|PF13812.2|6.8,PPR_1|PF12854.3|0.0062,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|46,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|13,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|0.75,PPR_1|PF12854.3|0.00048,PPR_1|PF12854.3|0.98,PPR_1|PF12854.3|26,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|1.4e+03,DYW_deaminase|PF14432.2|3.4e-26,TPR_14|PF13428.2|4e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|11,TPR_14|PF13428.2|5e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|72 R_Transcript_106445:202-2490(+)
ATGGCTTCTCTCCCTTCAATTGCCTTAAATGGCAATCTCAAACTGGAACCTGATCTTAGAAGGATCCCCTCCCATAAAAAGAGTCGAAGTGTTAGTTATCCAAAAACCCAAAGCATAACCCACCTTGATGCAACCTTGGAGAGAAGCTTCTTTGACTTCACAGAGGCATTGTCTACCTTAAATGAAGGTACCCAAGCTGAATCCCTATTCTATGTTCCTTTATTGAAAGAATGTGTTGACAAGAAATCGGTATCAAATGCTCGAATGATGCATGCCCACATCGTCAAAACTGGTACACATGAAGATGCATTTGTTATGACTAGCCTTGTAAATGTTTATGCTAAATGTGGGCATATGGAATCTGCCCAAAAGGTGTTTGACCAAATGTCTAGGAGAAATGTTGTTAGTTGGACAGGACTTATGACAGGATATGTTCATAATTCGCGGCCTGAGGTAGCTATCCAGGTGTTCCTACAAATGTTGGAAGTGGGGGCTTATCCTTCGAGTTACACGTTTGGGACGATATTAAGTGCTTGTTCATCTATTTCACTTGTCGATTTAGGGAAACAAATCCATGCCTACATTATCAAATATGGGATAGAATCTGACACGAGTATTGGCAATGCACTTTGTAGCTTTTACTCTAAGTGTGGGAGCTTGGGCTCTGCTGTTGATGCATTTCGAAGAATAGAAGAAAAGAATGTGATATCATGGACGGCAGTTATTTCTGCTTGTAGTGATAATGGGGATCCTGAAGTGGGTTTAAGGTATTTCATTGAGATGCTTTCGGAAGATGTGGAGCTCAATGAGTTCACGTTTACTACTGTCTTGAGTTTGTGTTGTGGAGTGCATGCTTTGGATGTAGGGAGACAAATACAATCCATGAGCATCAAACTTGGATTCAAAGGGAACCTACCAATCAAAAATTCCATAATGTATCTTTACTTGAAATCTGGATTGATTAATGAAGCACATAGACTATTAGATGAGATGGAGACTATCAACTTGGTGACATGGAATGCAGTAATAGCAGGCCATGCCCAAATGATGGATCTCGCAGAAGATGGTATTTCTTCCCATAAAAGTGGAAACGAGGCCTTAAACATGTATGTAAAGATGAACCGATCAGGCATGAAACCAGATCTATTCACCTTGTCGAGTGTCTTGAGCGTATGCAGCGGACTTGTGGCCTTGGAACCAGGTGAACAAGTTCATGCTCAGACCATTAAAACTGGGTTCTTGGCAGATGTGATTGTGGGTACTGCCTTGGTTAACATGTACAGTAAATGTGGAAATATAGATAGGGCCAGTAAAGCTTTCTTGGAGATGCAGACTAGGACTATGATATCCTGGTCATCTATGATTTCAGCCTTTGCACAACATGGTCAACCTCAAAAAGCATTACAGCTATTTGAGGAAATGCGTTTGGCTGGAGAGAAACCTAATAAGATCACGTTTATTGCTGTTCTTTCAGCTTGCAGCCATGGGGGGATGGTTGATGAGGCATTAGGATACTTCGAAATGATGAAGAAAACTTACAAGATTAAGCCAATAATGGAGCACTATGCATGCCTGGTAGATATGTATGTACGTCTTGGGTGTTTAGAGGAAGCTTTTGATCTTACCAAGAAAATGGGCTGTGAACCCAACGATGTCGTTTGGTCAATCTTGATTGCTGGTTGCAGAAGTCAAGGAAATTTGGAGCTGGGTTTTCATGCAGCCGAACAATTACTCAAATTGAAGCCCAGAGATAAGGAGACCTATGTTATGTTGTTAAACATGTATCTCACAGCCGAAAGATGGCAAGACGTTTCAAGAGTCAGAAAAATGATGAAGGATGAGAAGCTTGGGAAGTTGCAAGACTGGAGCTGGTTAAGCATCAAGGACAAAGTTTACTCGTTCGCACCACATAGCCAATCATATCCTCTTAGAACAGAGGTTGAAAATTACCTGGGAGTGTTGCTTGATGAAGCCATTAGTAAGGGATATAGATCTCAAACCCAACAAGCAACTGATGGGGAGGATGATGATGCAGATGAAGACAAGCCAGTATCATTATCCAGTTTTCATCACAGTGAAAAGCTAGCGGTTGCATTTGGATTGTTACATACACAAAAACCCGTGCCTATACGAGTTGTTAAGAGTATGAGCATGTGTAGGGACTGTCATGCATTCATCAAGCTCCTCTCTGAAATGACTGGTAGGGAAATTATAATTCGTGACAGTAAGCGACTTCACAGATTTGTCGATGGACATTGTTCCTGTGGAGATTTTGGCAATCTTCTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106445.p1 GENE.R_Transcript_106445~~R_Transcript_106445.p1 ORF type:complete len:763 (+),score=116.77,PPR_2|PF13041.2|0.00039,PPR_2|PF13041.2|1.3e-08,PPR_2|PF13041.2|7.9e+02,PPR_2|PF13041.2|3e-08,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|3.7e-06,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|4.7e-10,PPR_2|PF13041.2|0.099,PPR_2|PF13041.2|0.00023,PPR_2|PF13041.2|6.2,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|0.001,PPR|PF01535.16|6e+02,PPR|PF01535.16|26,PPR|PF01535.16|0.00015,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.013,PPR|PF01535.16|16,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|0.017,PPR|PF01535.16|2e-08,PPR|PF01535.16|0.00068,PPR|PF01535.16|0.026,PPR|PF01535.16|22,PPR|PF01535.16|35,PPR|PF01535.16|6.9e+03,PPR|PF01535.16|6e+03,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.00052,PPR_3|PF13812.2|0.14,PPR_3|PF13812.2|1.2e+02,PPR_3|PF13812.2|3e+02,PPR_3|PF13812.2|0.0075,PPR_3|PF13812.2|4.3e+03,PPR_3|PF13812.2|0.046,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.99,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.085,PPR_3|PF13812.2|17,PPR_3|PF13812.2|64,PPR_3|PF13812.2|6.8,PPR_1|PF12854.3|0.0062,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|2.3e+02,PPR_1|PF12854.3|46,PPR_1|PF12854.3|0.34,PPR_1|PF12854.3|13,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|0.75,PPR_1|PF12854.3|0.00048,PPR_1|PF12854.3|0.98,PPR_1|PF12854.3|26,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|1.4e+03,DYW_deaminase|PF14432.2|3.4e-26,TPR_14|PF13428.2|4e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1e+02,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|11,TPR_14|PF13428.2|5e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|72 R_Transcript_106445:202-2490(+)
MASLPSIALNGNLKLEPDLRRIPSHKKSRSVSYPKTQSITHLDATLERSFFDFTEALSTLNEGTQAESLFYVPLLKECVDKKSVSNARMMHAHIVKTGTHEDAFVMTSLVNVYAKCGHMESAQKVFDQMSRRNVVSWTGLMTGYVHNSRPEVAIQVFLQMLEVGAYPSSYTFGTILSACSSISLVDLGKQIHAYIIKYGIESDTSIGNALCSFYSKCGSLGSAVDAFRRIEEKNVISWTAVISACSDNGDPEVGLRYFIEMLSEDVELNEFTFTTVLSLCCGVHALDVGRQIQSMSIKLGFKGNLPIKNSIMYLYLKSGLINEAHRLLDEMETINLVTWNAVIAGHAQMMDLAEDGISSHKSGNEALNMYVKMNRSGMKPDLFTLSSVLSVCSGLVALEPGEQVHAQTIKTGFLADVIVGTALVNMYSKCGNIDRASKAFLEMQTRTMISWSSMISAFAQHGQPQKALQLFEEMRLAGEKPNKITFIAVLSACSHGGMVDEALGYFEMMKKTYKIKPIMEHYACLVDMYVRLGCLEEAFDLTKKMGCEPNDVVWSILIAGCRSQGNLELGFHAAEQLLKLKPRDKETYVMLLNMYLTAERWQDVSRVRKMMKDEKLGKLQDWSWLSIKDKVYSFAPHSQSYPLRTEVENYLGVLLDEAISKGYRSQTQQATDGEDDDADEDKPVSLSSFHHSEKLAVAFGLLHTQKPVPIRVVKSMSMCRDCHAFIKLLSEMTGREIIIRDSKRLHRFVDGHCSCGDFGNLL*

Click here to download the sequence:
Link to NCBI Protein BLAST