Transcript Information: R_Transcript_106579.p1


Annotated TAIR IDAT5G09320.1
Annotated Gene NameVacuolar sorting protein 9 (VPS9) domain
Annotated Gene Symbol(s)VPS9B
Annotation TypeHomolog
Chromosome Positionchr5:2889007-2892016 | Reverse length=712
E-Value6E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.3943458491609
Replicate 24.9785042224212
Replicate 35.195342547581
Condition 2: 8 Hour
Replicate 14.9644880820875
Replicate 27.2231027253314
Replicate 35.1772635102822
Condition 3: 24 Hour
Replicate 15.5224965839838
Replicate 24.1685197215868
Replicate 36.0172384018962


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106579.p1 GENE.R_Transcript_106579~~R_Transcript_106579.p1 ORF type:complete len:291 (+),score=55.03,PPR_2|PF13041.2|4.5e+02,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|1e-09,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|1.5e+04,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.00013,PPR|PF01535.16|0.00092,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|1.1e+04,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|0.0054,PPR_1|PF12854.3|1.6e+03 R_Transcript_106579:109-873(+)
ATGACCACCCTCAACCTCAAACTCCAATTCTCTAAACTGGGTATCCCTCAAAACCCCAGAATTCACACTTTCAACCGCAATCATAATCCCTATCCAATGAAACTCCACTTGGGTTCCTCTCCTTACAGAAAAATTTCAAGTGGGTTAAGGAGCGTAGGACCCAAAAAGCCCTTGTGGAGATCAAGGGTTTTGTCCACTGAAGCCATTCAAGCAGTTCAGGCCCTTAAACTTGCCAAAAATCCCTCCAAATTAGAGCAGGTCTTGAATACCAAGCTTTCTAGGCTCTTGAAGGCTGACTTGTTGGACACTTTGACTGAGCTTCAGAGACAAAATGAACTTCATTTGGCTCTCAAGGTGTTCGACTTCGTGAAAAAGGAGTCATGGTATACCACAGATGTTTCCTTATACTATGACATGATTCTACTGCTGGGAAAGAACAAGATGGTTGATAAGGCTGAAGAACTTTTTAAAGAATTGAAGAAAGAAGGTCTACAGCCGGACACACGTGTGTATACTGAGCTTATTGGTGCATATTTCACAGTAAATATGATAGAGAAAGCTATGGAAACTTATGATCAAATGAAGGCTTCTGGTTGTGCACCAGATAAGTTAACATTGATGATTATGGTGAGGAATCTGGAGAAGGCAGGAGAAGAAGAGCTTGCAGCATCCGTGAAGAAAGACTTTGAAGAATACGTGGATGATCCCGAGGAGTTTCTAGAAGAATTAGAAAAGAAATATTCAAGAGATCCCATTTTGATCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106579.p1 GENE.R_Transcript_106579~~R_Transcript_106579.p1 ORF type:complete len:291 (+),score=55.03,PPR_2|PF13041.2|4.5e+02,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|1e-09,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|1.5e+04,PPR|PF01535.16|2.7e+03,PPR|PF01535.16|0.00013,PPR|PF01535.16|0.00092,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|1.1e+04,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|1.2,PPR_1|PF12854.3|0.0054,PPR_1|PF12854.3|1.6e+03 R_Transcript_106579:109-873(+)
MTTLNLKLQFSKLGIPQNPRIHTFNRNHNPYPMKLHLGSSPYRKISSGLRSVGPKKPLWRSRVLSTEAIQAVQALKLAKNPSKLEQVLNTKLSRLLKADLLDTLTELQRQNELHLALKVFDFVKKESWYTTDVSLYYDMILLLGKNKMVDKAEELFKELKKEGLQPDTRVYTELIGAYFTVNMIEKAMETYDQMKASGCAPDKLTLMIMVRNLEKAGEEELAASVKKDFEEYVDDPEEFLEELEKKYSRDPILI*

Click here to download the sequence:
Link to NCBI Protein BLAST