Transcript Information: R_Transcript_106641.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value2E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5271401595581
Replicate 20.66920479414496
Replicate 30.45630951386758
Condition 2: 8 Hour
Replicate 15.5605350677011
Replicate 21.7817435730028
Replicate 32.1695152135921
Condition 3: 24 Hour
Replicate 10.1829307348821
Replicate 20.087869557332977
Replicate 30.43601005352385


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106641.p1 GENE.R_Transcript_106641~~R_Transcript_106641.p1 ORF type:complete len:251 (+),score=18.56,LRR_8|PF13855.2|8.9e+03,LRR_8|PF13855.2|0.0094,LRR_8|PF13855.2|9.7e-12,LRR_8|PF13855.2|1e-10,LRR_4|PF12799.3|1.4e+04,LRR_4|PF12799.3|1.3e+02,LRR_4|PF12799.3|1.2,LRR_4|PF12799.3|0.00014,LRR_4|PF12799.3|1.3e-07,LRR_4|PF12799.3|3.1e-07,LRR_4|PF12799.3|0.027,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|6.5e+03,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|0.079,LRR_1|PF00560.29|0.021,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|2.4e-07,LRR_6|PF13516.2|1.7e+03,LRR_6|PF13516.2|44,LRR_6|PF13516.2|17,LRR_6|PF13516.2|8,LRR_6|PF13516.2|2.3e+02 R_Transcript_106641:51-755(+)
ATGCAAGCCATGAAACCCATTTTGGTCCTCCCATTTCTTCTCTTCCTTTTCTTATCTTTCAATCCTACTTCAACTTCAGCTGAGAAATGTGACCCAAATGACAAGAAAGTTCTCCTCCACATCAAGGCTGATTTCGGAAATGATGAAATTGCTTTCCTTGGTTGGGACAAAAACACCGAATGTTGTATCTGGTTTGGCGTACAATGTAATAGCCACAACCGTGTAACTTCACTTGGAATTCTATTGTCATCCGATGTTACATACCCCATTTCACCTGCCATAGGCTACCTCCCTTATCTCGAGTCTCTTAGACTCACTTTCTTTTTCAAACTCACCGGTCCAATTCCCGAGTCATTTGCTAGGTTAACCCACCTCAAAAGCCTTGACCTTGGTGGTCAAAACTTGACCGGCCCGATTCCTGCTTTTTTGGGCCAGCTCAAGAAACTCACCTATCTCGACCTCTCTAGCAACCGAATCCCTGGCTCAATCCCTTCTTCGTTGGGCCAACTCACGAGCCTTACTTATCTTGACCTTAGCTCGAACCAACTCACAGGTTCAATCCCAAGCACTTTCGGCCAACTTACCGGCCTAGAGAAACTCGACCTCTATTTTAATAAACTTTCAGGGCCGATCCCTGCCTCTCTCTCTCATTTGACCAAAGTCAATCGCCTTGACATTCGAGCAAACCAGTTCAATCCCGGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106641.p1 GENE.R_Transcript_106641~~R_Transcript_106641.p1 ORF type:complete len:251 (+),score=18.56,LRR_8|PF13855.2|8.9e+03,LRR_8|PF13855.2|0.0094,LRR_8|PF13855.2|9.7e-12,LRR_8|PF13855.2|1e-10,LRR_4|PF12799.3|1.4e+04,LRR_4|PF12799.3|1.3e+02,LRR_4|PF12799.3|1.2,LRR_4|PF12799.3|0.00014,LRR_4|PF12799.3|1.3e-07,LRR_4|PF12799.3|3.1e-07,LRR_4|PF12799.3|0.027,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|6.5e+03,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|0.079,LRR_1|PF00560.29|0.021,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|2.4e-07,LRR_6|PF13516.2|1.7e+03,LRR_6|PF13516.2|44,LRR_6|PF13516.2|17,LRR_6|PF13516.2|8,LRR_6|PF13516.2|2.3e+02 R_Transcript_106641:51-755(+)
MQAMKPILVLPFLLFLFLSFNPTSTSAEKCDPNDKKVLLHIKADFGNDEIAFLGWDKNTECCIWFGVQCNSHNRVTSLGILLSSDVTYPISPAIGYLPYLESLRLTFFFKLTGPIPESFARLTHLKSLDLGGQNLTGPIPAFLGQLKKLTYLDLSSNRIPGSIPSSLGQLTSLTYLDLSSNQLTGSIPSTFGQLTGLEKLDLYFNKLSGPIPASLSHLTKVNRLDIRANQFNPG*

Click here to download the sequence:
Link to NCBI Protein BLAST