Transcript Information: R_Transcript_106644.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value4E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.091261902773516
Condition 2: 8 Hour
Replicate 10.58531948081064
Replicate 20.35634871460057
Replicate 30.1446343475728
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106644.p1 GENE.R_Transcript_106644~~R_Transcript_106644.p1 ORF type:complete len:251 (+),score=27.59,LRR_8|PF13855.2|8.9e+03,LRR_8|PF13855.2|0.012,LRR_8|PF13855.2|7e-09,LRR_8|PF13855.2|8.4e-12,LRR_4|PF12799.3|1.4e+04,LRR_4|PF12799.3|1.8,LRR_4|PF12799.3|0.00015,LRR_4|PF12799.3|1.3e-07,LRR_4|PF12799.3|3.5e-08,LRR_4|PF12799.3|0.0035,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|6.1e+03,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|0.079,LRR_1|PF00560.29|0.021,LRR_1|PF00560.29|0.023,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|1e-08,LRR_6|PF13516.2|2.7e+03,LRR_6|PF13516.2|44,LRR_6|PF13516.2|17,LRR_6|PF13516.2|8.5,LRR_6|PF13516.2|26,LRR_6|PF13516.2|8.9e+03 R_Transcript_106644:51-755(+)
ATGCAAGCCATGAAACCCATTTTGGTCCTCCCATTTCTTCTCTTCCTTTTCTTATCTTTCAATCCTACTTCAACTTCAGCTGAGAAATGTGACCCAAATGACAAGAAAGTTCTCCTCCAAATCAAGGCTGATTTTGGAAATGATGAAATTGGTTTCATTGGTTGGGATAAAAACACTGAATGTTGTAGCTGGTTTGGTGTACAATGTAATAGCCATGACCGTGTAAATTCACTTGGAATTCAAATGTCACTCGATGTTTCATACCCCATTTCACCTGCCATTGGGTACCTCCAGTATCTCAAGTCTCTCAGACTCACTTTCTTTTTCAAACTCACCGGTCCAATCCCCGAGTCATTTGCTAGGCTAACCCATCTCAAAAGCCTTGACCTTGGTGGTCAAAACTTGACCGGCCCGATTCCTGCTTTTTTGGGCCAGCTCAAGAAACTCACCTATCTCGACCTCTCTAGCAACCGAATCCCTGGCTCAATCCCTTCTTCGTTGGGCCAACTCACGAGCCTTACTTATCTTGACCTTAGCTCGAACCAACTCACAGGTTCAATCCCAAGCACTTTCGGCCAACTTACCAGCCTAGAGAAACTCGACCTCTCCTTTAATAAACTTTCAGGGCCGATCCCTGCCTCTCTCTCTCATTTGACCAAAGTCAATCGCCTTGACATTCGAGCAAACCAGTTCAATCCCGGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106644.p1 GENE.R_Transcript_106644~~R_Transcript_106644.p1 ORF type:complete len:251 (+),score=27.59,LRR_8|PF13855.2|8.9e+03,LRR_8|PF13855.2|0.012,LRR_8|PF13855.2|7e-09,LRR_8|PF13855.2|8.4e-12,LRR_4|PF12799.3|1.4e+04,LRR_4|PF12799.3|1.8,LRR_4|PF12799.3|0.00015,LRR_4|PF12799.3|1.3e-07,LRR_4|PF12799.3|3.5e-08,LRR_4|PF12799.3|0.0035,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|6.1e+03,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|0.079,LRR_1|PF00560.29|0.021,LRR_1|PF00560.29|0.023,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|1e-08,LRR_6|PF13516.2|2.7e+03,LRR_6|PF13516.2|44,LRR_6|PF13516.2|17,LRR_6|PF13516.2|8.5,LRR_6|PF13516.2|26,LRR_6|PF13516.2|8.9e+03 R_Transcript_106644:51-755(+)
MQAMKPILVLPFLLFLFLSFNPTSTSAEKCDPNDKKVLLQIKADFGNDEIGFIGWDKNTECCSWFGVQCNSHDRVNSLGIQMSLDVSYPISPAIGYLQYLKSLRLTFFFKLTGPIPESFARLTHLKSLDLGGQNLTGPIPAFLGQLKKLTYLDLSSNRIPGSIPSSLGQLTSLTYLDLSSNQLTGSIPSTFGQLTSLEKLDLSFNKLSGPIPASLSHLTKVNRLDIRANQFNPG*

Click here to download the sequence:
Link to NCBI Protein BLAST