Transcript Information: R_Transcript_106645.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value6E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.58176767983167
Replicate 20
Replicate 30.54757141664109
Condition 2: 8 Hour
Replicate 13.3168103912603
Replicate 20.26726153595043
Replicate 30.86780608543683
Condition 3: 24 Hour
Replicate 10
Replicate 20.17573911466595
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106645.p1 GENE.R_Transcript_106645~~R_Transcript_106645.p1 ORF type:complete len:251 (+),score=28.87,LRR_8|PF13855.2|8.9e+03,LRR_8|PF13855.2|0.012,LRR_8|PF13855.2|2.1e-11,LRR_8|PF13855.2|4.3e-07,LRR_4|PF12799.3|1.4e+04,LRR_4|PF12799.3|2,LRR_4|PF12799.3|9.4e-05,LRR_4|PF12799.3|5.9e-06,LRR_4|PF12799.3|1.9e-06,LRR_4|PF12799.3|0.0044,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|6.1e+03,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|0.0048,LRR_1|PF00560.29|1.1,LRR_1|PF00560.29|0.029,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|1e-08 R_Transcript_106645:51-755(+)
ATGCAAGCCATGAAACCCATTTTGGTCCTCCCATTTCTTCTCTTCCTTTTCTTATCTTTCAATCCTACTTCAACTTCAGCTGAGAAATGTGACCCAAATGACAAGAAAGTTCTCCTCCAAATCAAGGCTGATTTTGGAAATGATGAAATTGGTTTCATTGGTTGGGATAAAAACACTGAATGTTGTAGCTGGTTTGGTGTACAATGTAATAGCCATGACCGTGTAACTTCACTTGGAATTCAAATGTCACCCGATGTTTCATACCCCATTTCACCTGCCATTGGGTACCTCCAGTATCTCAAGTCTCTCAGACTCACTTTCTTTTTCAAACTCACCGGTCCAATCCCCGAGTCATTTGCTAGGCTAACCCATCTCAAAAGCCTTGACCTTGGTGGTCAAAACTTGACCGGCCCAATTCCCGCTTTTTTGGGTCAGCTCAAGAAACTCACTCATCTAGACCTCTCCAACAACCAAATCCCTAGTCTAATCCCGTCTTCATTGGACCAACTCACCAGCCTTACTTATCTCGACCTTAGCTTGAACCAACTCACCGGTTCAATCCCAAGCACTCTCGGCCAACTTACCGGCCTAGAGAAACTCGACCTCTCTTCCAACAAACTTTCAGGGCCGATCCCTGCCTCTCTCTCTCATTTGACCAAAGTCAATCGCCTTGACATTCGAGCAAACCAGTTCAATCCCGGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106645.p1 GENE.R_Transcript_106645~~R_Transcript_106645.p1 ORF type:complete len:251 (+),score=28.87,LRR_8|PF13855.2|8.9e+03,LRR_8|PF13855.2|0.012,LRR_8|PF13855.2|2.1e-11,LRR_8|PF13855.2|4.3e-07,LRR_4|PF12799.3|1.4e+04,LRR_4|PF12799.3|2,LRR_4|PF12799.3|9.4e-05,LRR_4|PF12799.3|5.9e-06,LRR_4|PF12799.3|1.9e-06,LRR_4|PF12799.3|0.0044,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|6.1e+03,LRR_1|PF00560.29|0.38,LRR_1|PF00560.29|0.0048,LRR_1|PF00560.29|1.1,LRR_1|PF00560.29|0.029,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|1e-08 R_Transcript_106645:51-755(+)
MQAMKPILVLPFLLFLFLSFNPTSTSAEKCDPNDKKVLLQIKADFGNDEIGFIGWDKNTECCSWFGVQCNSHDRVTSLGIQMSPDVSYPISPAIGYLQYLKSLRLTFFFKLTGPIPESFARLTHLKSLDLGGQNLTGPIPAFLGQLKKLTHLDLSNNQIPSLIPSSLDQLTSLTYLDLSLNQLTGSIPSTLGQLTGLEKLDLSSNKLSGPIPASLSHLTKVNRLDIRANQFNPG*

Click here to download the sequence:
Link to NCBI Protein BLAST