Transcript Information: R_Transcript_106646.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value3E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.30506341428499
Replicate 20.40939861535957
Replicate 30.38284241107776
Condition 2: 8 Hour
Replicate 10
Replicate 20.56057921050326
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.061435261533642
Replicate 30.18290561019691


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106646.p1 GENE.R_Transcript_106646~~R_Transcript_106646.p1 ORF type:internal len:359 (+),score=6.70,LRR_8|PF13855.2|2.9e-06,LRR_8|PF13855.2|2.9e-10,LRR_8|PF13855.2|1.2e+03,LRR_8|PF13855.2|23,LRR_8|PF13855.2|1.6,LRR_8|PF13855.2|0.011,LRR_4|PF12799.3|1.5e+02,LRR_4|PF12799.3|0.75,LRR_4|PF12799.3|3.3e-05,LRR_4|PF12799.3|0.00012,LRR_4|PF12799.3|1.1e+02,LRR_4|PF12799.3|7.8,LRR_4|PF12799.3|0.71,LRR_1|PF00560.29|8.8e+03,LRR_1|PF00560.29|0.87,LRR_1|PF00560.29|0.59,LRR_1|PF00560.29|10,LRR_1|PF00560.29|0.039,LRR_1|PF00560.29|1.6e+02,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|1.5e+02,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|1.2e+02,LRRNT_2|PF08263.8|3.1e-09 R_Transcript_106646:2-1075(+)
AAATCTTTTCTATTAACAAATCAAGCCATGAAACCCATTGTGGTGCTCTTTTTTGTTCTCATTCTCTTGTGCTCATCTTCAGCCAAGAAATGCGACCCATATGACGAGATTGTTCTCCTCCAAGTCAAGGCTGATTTTGGCAACGATCAAATGGGGTTCAGTGGTTGGAACAAAAGCACTGAATGTTGTAGCTGGTTTGGGGTCCAATGTAACAGTCTCAACCGTGTCACTTCACTTAACATTCTTATGGTACCCGATGTTTCATACCTCATTTCACCCGTCATTGGCTACCTCCCTTATCTCGAATCTCTCAAACTCAATTTCTTTTCGGAACTCACCGGTACTTCGAAACTCACCGGTCCAATCCCCGAGTCATTTGCTAGGCTAACTCACCTTAAAACCCTTGACATTGGCGGTCAAAACCTGATCGGCCCAATTCCCGCTTTTTTAAGCCAGCTCAAGAATCTCACTTATCTCGACCTCTCCAGCAACCGGTTCGTAGGCCAAATTCCTTCTACATTGGCCCAGCTCACGGGCCTCACTTATCTCGACCTCAGTCTGAATGATCTCAATGGTTCGATCCCAAGCACTCTTCACCAACTTACTAGCCTAGAAAAACTCGATCTTTCTAACAACGGATTATCCGGCCCAATCCCCGCCTCTCTTTGCTATTTGACCAAACTCACCCGCGTTAACTTTCTAGGGAACCAGCTCACTGGTTCAATTCCGGCTTGTCTCGGCTCGTTTAACAACCCTCAAATGCAACTCTTCCTAGGGACAAACAAGTTATCCGGTCCCATCCCGAAATCTCTTGGTCAGGCTAACATAAATCTGTTAGACCTGTCCTATAACAAGCTAACCGGGGATGCTACATTCTTGTTTGGGAGGGACAAAACTGCATTGGATACCATATACCTTGATGATAATCATTTCCATTTCGACTTCTCGAAGGTAGAATTCCCAATTGGCCTAAGGAACCTTGATATCCGAAACAACGAGATATATGGATCACTTCCAAAACAGCTAGGCCAGCTGCCATTGACGTACATTGATGTAAGTCACAACCAGCTTTGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106646.p1 GENE.R_Transcript_106646~~R_Transcript_106646.p1 ORF type:internal len:359 (+),score=6.70,LRR_8|PF13855.2|2.9e-06,LRR_8|PF13855.2|2.9e-10,LRR_8|PF13855.2|1.2e+03,LRR_8|PF13855.2|23,LRR_8|PF13855.2|1.6,LRR_8|PF13855.2|0.011,LRR_4|PF12799.3|1.5e+02,LRR_4|PF12799.3|0.75,LRR_4|PF12799.3|3.3e-05,LRR_4|PF12799.3|0.00012,LRR_4|PF12799.3|1.1e+02,LRR_4|PF12799.3|7.8,LRR_4|PF12799.3|0.71,LRR_1|PF00560.29|8.8e+03,LRR_1|PF00560.29|0.87,LRR_1|PF00560.29|0.59,LRR_1|PF00560.29|10,LRR_1|PF00560.29|0.039,LRR_1|PF00560.29|1.6e+02,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|1.5e+02,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|1.2e+02,LRRNT_2|PF08263.8|3.1e-09 R_Transcript_106646:2-1075(+)
KSFLLTNQAMKPIVVLFFVLILLCSSSAKKCDPYDEIVLLQVKADFGNDQMGFSGWNKSTECCSWFGVQCNSLNRVTSLNILMVPDVSYLISPVIGYLPYLESLKLNFFSELTGTSKLTGPIPESFARLTHLKTLDIGGQNLIGPIPAFLSQLKNLTYLDLSSNRFVGQIPSTLAQLTGLTYLDLSLNDLNGSIPSTLHQLTSLEKLDLSNNGLSGPIPASLCYLTKLTRVNFLGNQLTGSIPACLGSFNNPQMQLFLGTNKLSGPIPKSLGQANINLLDLSYNKLTGDATFLFGRDKTALDTIYLDDNHFHFDFSKVEFPIGLRNLDIRNNEIYGSLPKQLGQLPLTYIDVSHNQLC

Click here to download the sequence:
Link to NCBI Protein BLAST