Transcript Information: R_Transcript_106750.p1


Annotated TAIR IDAT1G72390.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:27245455-27251218 | Forward length=1325
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.8575460933931
Replicate 23.4854859309025
Replicate 35.5856778729299
Condition 2: 8 Hour
Replicate 16.3597123413417
Replicate 26.2340504577094
Replicate 37.9584504070322
Condition 3: 24 Hour
Replicate 19.0627721939388
Replicate 25.3955677031754
Replicate 37.910171272866


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_106750.p1 GENE.R_Transcript_106750~~R_Transcript_106750.p1 ORF type:complete len:1259 (+),score=301.51,Spt20|PF12090.4|1e-14,Spt20|PF12090.4|1.6e+04,Spt20|PF12090.4|4e+03 R_Transcript_106750:218-3994(+)
ATGGGAGTTTCCTTCAAAATCAACAGAACTGGAACCAGGTTTAAGCCCAAGCCACTAATTCAGGATTCAACTCCCTTCAATAATGCCACTGAGAATTCTCTCGAAACTTCCAGAATTCAATCGAAGAACCAGTCCAATGGGAAGGATGAAGATGCTATCGGTCCTTCGAGTTCATCATTATCCTCTGGAAAGTGTCAAGTTTCTGTAGATGATGAAGTTTCCTTCGTTCTGAATCTGTACCCGGATGGATATTCCATTGGAAAGCCATCAGAGAATGATACTGGATTCCATGCTGCCTTTCAAGAGGGTTCAAAGTTATTGCATCCATATGACCGGACATCAGAAGGCCTCTTTGCGGCTATTGAGTCAGGTCGCTTACCTGGAGGTGTTCTGGATGATATACCTTGCAAATATGTAGAAGGTGCACTTATATGTGAGGTTCGGGACTACCGGAAATGCAGTTCTGGTTCTGGAGCCAACATTCCATCAGTTGATGGATCTGCAACTGTTACCAAGGTGCGTCTTAAGATGTCCTTGGAGAATGTTGTGAAGGATATTCCATTGATAGCTGAGGATTCTTGGACTTATGGAGACCTGATGGAAGTAGAGTCTCGAATATTGAAAGCTCTACAACCAAAGCTGTGTCTTGATCCTGCTCCCAGATTGGAAAGACTTTGTGAGAACCCAGTTTCCTCTAAGCTTAATTTGGGACTGGTCGGAGCACGAAAGAGGAGATTGAGACAAATGCCAGAAATTACTGTCACATCAAATAATCGGCCACATGGAAAGAAAATTTGTATAGACCGGGCACCTGAAAGCTCAAGCTACAGAATTGGAGAATTAGGGCCCTCATCTGGTGACATGATGTCACAGCATGTCCAAAATAATGTAGCTGCCCAAGGGTCAGCGAATCAAAGAAATGTGCACGATCATATGCAAGGTCCCTCCAACTTACCAGGAGTTTCACTTGCTGGTCAGGATATGCCAATTTCATACGCTGACAATGTGAATTCTACTAACCTTATAAAGATGGAAAGTCAGGAAGGGCAGTTGCCTCCTTATTCTACTCTAAATAAGAGGGCAAGGCTTGTATCTGTTGGTCCTGATGGTGTTCAGCAGCAGCAAAATGGGTCTTCTGTCAATGGCCTTCAAGCACCAGATGTGCAGTGGAGGAATCCATTGGTGCAACAGCAACAGAATGCAAGAGCAATGCAGTTTGCTAATCCTAGCATGCAGAAGTATCCTCAACTAGTTGGTGATGGGGTTTCCAACCATGATAGCATAAAATTAGAGAAAGCGGATGGCAATCTGGCTAAAACTGATATGCAGATGATGGAAGCAGAAAGCAGCCACATGGATCCCCGACAAAGGTTTCAGCCAAACTCCTTCATGAGACCTACTTTCCAACAGCCGAACTGGAGTAATTTTGGCCAGCAAATTGAAAAAGATCCAAGAAAGGAGGATCAATTTTCCAAGAGAAAATCAATTCAAAGTCCACGTCTTTCCGCTGGGGCTGTGGCTCAGTCTCCTTTATCAGCAAAGTCTGGAGAGATCTCTTGTGGTTCAATGGGGGCACAGTATGGGGCAGTTTCTTCTGCTGCTCCTCTTGGGCAATTGCAAAGGGACAAATCAGTTGTGACATCAATTCCTGCAGATCGGGCTACATCCATGACGTCAAGTGCCAATGATTCTATGCAACCACAGCATCAGGCCCAACTCACAACAAAGAGAAGGTCTAATTCCTTTTCCAAGAACCCAGGAATAAGCGCTGTGGGGTCTCCTGCTAGTGTCAACACTATGGGTGGCCCGATGAATGCATCTAGCCCTTCAGTTAGCACCCCACAGTTACCTGACCAAAGCATGATTGAGAGGTTTGCCAAGCTTGAGGTGGTAGCTATGAGGCATCAGTTGAACTGTAAAAAGAACAAGGTTGACGAATTTGCTAGAAAGCCACGATTATTTTCTGCACAAGAACTCCTGGTTCGCCTCTCAAGTACTACCAATAACGAGTCTGTTAAAGATGAAACTGGTCCAACACCAATGTCAAGGTCACTAATTGGTGGCAACATAAATGCATGCAAGATAAGGGTCTTAAATTTGCGGTCACAAGCAAATATTATTCCTGTTTCTCCGGGGGTAAAATCAAGAATGATCATGTCAGAGAAACCAAATGATGGTACTGTGGCTATGCATTATGGAGATTTGGAAGATGGGGACTATATCAATGCAGAAGATCATCTGCCTACATTGCCTAATACTCATTTGGCAGACTTGCTTGCAGCCCAGTTTTGTACTCTGATGAATCGTGAGGGCTACGCTGTAGATGATCACATCCAATCTAGACCAACCCGTATAAATACTACTTCCAACTCTCAACCAAATGCTCTGGGTCTTGCCCCTAATAATTCAGCAGGTGATATGCAGCAGCAGTATTCAGAATCAGGACAGCAAACAAGCGAGACCAAGCCAACAATTACCAGTGCTGCCGCTTTGAACTTGACTCCAACTGTCCTGCCGGGCTCTGGGATGCTCCCTCCTGGTAATTCACAGGCCTTACAGATGTCTCAGGGACTTGTGTCGGGGGTCTCAGTGTCGCCAAGGCCACAGCAGATGGACCCGCAACAGGCACTTCAACAGCAACAGCAGCAGCCGACGCAGCAGCAAATGCCGCATCAGAATCAGGCATCGTTGATGGCACAACAGCAAGCTCAGTTCCCACGGTCTCCAATGATGTTGCCGACCAATTCAATGCCGCAAATGAATACATTCGGGCAAAATCCGAACTTGCCACTGAGTAGTCAGATGGGCAATAAGCCTTCTCTACAACTGTTACAGCAGCAGCAGCAGTCCCAGCAAGTTCCTCAGATGCAAAGAAGAATGATGATGGGGCTCGGACCGGCTATGGGTATGGGAAGTATCGGCAATAACATGGTTGGACTTGGAGGATTGGGTAATGTTATGGGAATTGGAGCCAGAGGGATGAGTGCAACTGGAATCTCGTCACCGATGGGCACCATCTCGGGAGTTGGGACCAACATGGCTCAGAACCCAATCAACATGAGCCAGGCAAATGCGATTAGCCAGCACATTCGTGCTGGGGCATTGAGCCAACACCAAGCTCAGGCTGCTATGCTTCAAAGATTAAAAATGATGCAAAGCCGTGGCTTGCTAGGAACGCAGTCCGGTTTGGCTGGTATCTCTGGAGGAGCCCGGCAGCTGCAGCCTGGTTCAGCTGGGCTTTCCATGTTGGGCCAGAATCTAAACAGAGGAAACATCCCGATGCAAAGAACAATGGGCCAGACGGCCATGCCCAAATTAATGACAGGGATGAGCGTTCCGATGAACCAGCAACAAATGCAGCTTCAGCAGCAACAGCTCCAGCAACAGCAACAGCAACAAATGCAGCTCCAGCAGCAACTGCAGCAGCAACAAACACAACAGCAGCAGATGCAACCGTCAGAAGCCACCTCACCACTGCAGGCTGTGGTTTCCCCCCAGCAGGTGGGGTCACCTTCGACACTAGGAATTCCACACCCCATAAGTCAACAGGTTACACCACAGCAACAACAAGCGAGCCCACAACAAATGGGGCAACGGACTCCGATGAGCCCGCCTTTGAGTTCGGGGCCCATGCATCCAATGAGTGCTGGTAACCAAGAGGCTTGTCCTGCAAGCCCCGCCTTGAGCTCTCAAACCTTAGGCTCTGTTGGGAGCATAACAAATTCTCCTATGGATCTGCAAGGGGTGAACAAGAGCAATTCTGTCACTAATACATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_106750.p1 GENE.R_Transcript_106750~~R_Transcript_106750.p1 ORF type:complete len:1259 (+),score=301.51,Spt20|PF12090.4|1e-14,Spt20|PF12090.4|1.6e+04,Spt20|PF12090.4|4e+03 R_Transcript_106750:218-3994(+)
MGVSFKINRTGTRFKPKPLIQDSTPFNNATENSLETSRIQSKNQSNGKDEDAIGPSSSSLSSGKCQVSVDDEVSFVLNLYPDGYSIGKPSENDTGFHAAFQEGSKLLHPYDRTSEGLFAAIESGRLPGGVLDDIPCKYVEGALICEVRDYRKCSSGSGANIPSVDGSATVTKVRLKMSLENVVKDIPLIAEDSWTYGDLMEVESRILKALQPKLCLDPAPRLERLCENPVSSKLNLGLVGARKRRLRQMPEITVTSNNRPHGKKICIDRAPESSSYRIGELGPSSGDMMSQHVQNNVAAQGSANQRNVHDHMQGPSNLPGVSLAGQDMPISYADNVNSTNLIKMESQEGQLPPYSTLNKRARLVSVGPDGVQQQQNGSSVNGLQAPDVQWRNPLVQQQQNARAMQFANPSMQKYPQLVGDGVSNHDSIKLEKADGNLAKTDMQMMEAESSHMDPRQRFQPNSFMRPTFQQPNWSNFGQQIEKDPRKEDQFSKRKSIQSPRLSAGAVAQSPLSAKSGEISCGSMGAQYGAVSSAAPLGQLQRDKSVVTSIPADRATSMTSSANDSMQPQHQAQLTTKRRSNSFSKNPGISAVGSPASVNTMGGPMNASSPSVSTPQLPDQSMIERFAKLEVVAMRHQLNCKKNKVDEFARKPRLFSAQELLVRLSSTTNNESVKDETGPTPMSRSLIGGNINACKIRVLNLRSQANIIPVSPGVKSRMIMSEKPNDGTVAMHYGDLEDGDYINAEDHLPTLPNTHLADLLAAQFCTLMNREGYAVDDHIQSRPTRINTTSNSQPNALGLAPNNSAGDMQQQYSESGQQTSETKPTITSAAALNLTPTVLPGSGMLPPGNSQALQMSQGLVSGVSVSPRPQQMDPQQALQQQQQQPTQQQMPHQNQASLMAQQQAQFPRSPMMLPTNSMPQMNTFGQNPNLPLSSQMGNKPSLQLLQQQQQSQQVPQMQRRMMMGLGPAMGMGSIGNNMVGLGGLGNVMGIGARGMSATGISSPMGTISGVGTNMAQNPINMSQANAISQHIRAGALSQHQAQAAMLQRLKMMQSRGLLGTQSGLAGISGGARQLQPGSAGLSMLGQNLNRGNIPMQRTMGQTAMPKLMTGMSVPMNQQQMQLQQQQLQQQQQQQMQLQQQLQQQQTQQQQMQPSEATSPLQAVVSPQQVGSPSTLGIPHPISQQVTPQQQQASPQQMGQRTPMSPPLSSGPMHPMSAGNQEACPASPALSSQTLGSVGSITNSPMDLQGVNKSNSVTNT*

Click here to download the sequence:
Link to NCBI Protein BLAST