Transcript Information: R_Transcript_10689.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value7E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.712584728199
Replicate 210.016583684839
Replicate 39.2467564608322
Condition 2: 8 Hour
Replicate 16.5145879217441
Replicate 210.462430953215
Replicate 312.323111797327
Condition 3: 24 Hour
Replicate 19.1620606826159
Replicate 26.7784511269205
Replicate 312.249082439456


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_10689.p1 GENE.R_Transcript_10689~~R_Transcript_10689.p1 ORF type:5prime_partial len:218 (+),score=18.77,PIF1|PF05970.10|6.8e-25,Herpes_Helicase|PF02689.10|2.4e-07,UvrD_C_2|PF13538.2|1.4e-05 R_Transcript_10689:2-655(+)
GGTCACCTTGCAGCACATCCACATGCTTTTACCTCACGCGCAACACTAACTCCGACGAATGATGAGGTTGATTGTATCAACCAATTGGTGATTGAAAAATTCCCCGGCAAAGCATACACTTATAAGAGCTTCGACACTACTATTGATGATGATTGCAATGCTCACCCTGTTGAATTTTTGAACAGTCTATGTCCAGGGGGCATGAGTCCACACTGTCTGACATTAAAGCTTAATTGCCCTGTGATATTGCTTCGCAATCTTAACCCCTCTGTGGGGCTTTGCAATGGAACAAGGCTGATCTGCCGAGGATTCAAAACAAATGTAATTATTTGTGAAATAGCAACCGGATATCGAGCTGGTGAGCTTGTATTTATTCCACGAATCACTCTGCGACCAAGTGGTTCTGTTACATACCCCTACAGATTTGAGAGAAGGCAATTTCCAATAAAGCTTTGCTTTGCAATGACCATAAACAAATCACAAGGACAAACACTCAGTGATGTTGCCGTGTATCTTCGCAAGCAATGCTTCTCCCACGGACAGCTTTATGTTGCATTGTCACGAGCTAAGAAAGCAAGTACTGTGAAAGTCTTTGTAGAACCACGGAAACAAGGCCATGGATGCTCAACATCAATCACCAATATTGTCATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_10689.p1 GENE.R_Transcript_10689~~R_Transcript_10689.p1 ORF type:5prime_partial len:218 (+),score=18.77,PIF1|PF05970.10|6.8e-25,Herpes_Helicase|PF02689.10|2.4e-07,UvrD_C_2|PF13538.2|1.4e-05 R_Transcript_10689:2-655(+)
GHLAAHPHAFTSRATLTPTNDEVDCINQLVIEKFPGKAYTYKSFDTTIDDDCNAHPVEFLNSLCPGGMSPHCLTLKLNCPVILLRNLNPSVGLCNGTRLICRGFKTNVIICEIATGYRAGELVFIPRITLRPSGSVTYPYRFERRQFPIKLCFAMTINKSQGQTLSDVAVYLRKQCFSHGQLYVALSRAKKASTVKVFVEPRKQGHGCSTSITNIVI*

Click here to download the sequence:
Link to NCBI Protein BLAST