Transcript Information: R_Transcript_107260.p1


Annotated TAIR IDAT1G31780.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:11391341-11394610 | Forward length=680
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 134.122823707315
Replicate 227.593416329023
Replicate 331.418710390132
Condition 2: 8 Hour
Replicate 122.518564463679
Replicate 227.654347413346
Replicate 332.735401075791
Condition 3: 24 Hour
Replicate 139.986768973361
Replicate 233.19363927721
Replicate 339.630248658342


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_107260.p1 GENE.R_Transcript_107260~~R_Transcript_107260.p1 ORF type:complete len:697 (+),score=142.64,COG6|PF06419.7|5.3e-228 R_Transcript_107260:239-2329(+)
ATGGGAACAGGAGGAGCATTAGCACCAGGTCTATCTAGAAAGCTCAAGAAAGTTCTGGAATCTCGGATCGATTCTCCTGACCTTCTCTCTTCTCTTTCCACTCTCTCCACTTTCTACGCTGATAACTCCGCTCAAGCTCGCCGGAATCTCAGATCCACCATTGAAAAACGCTCTTTGTCCATCAATCACGAGTTTCTTCTTGCCTCCGAGTCCGCTCAGCAGGCTTTGGATCAAGTCGAGGCGGAAGTTAATGCGCTTGCTGATTGTTGCGACAGTATTGCAAAGGTGTTAAACAGTTGTAACTCAACCACGGGGGATATCATAAGCACCACAGAACGGCTAAAACAGGATCTTGATGTTACTACACAAAGACAAGAGATTGTTGCGTGCTTTCTCCGTGATTATCAGCTTTCTAATGAAGAGATCACTGCACTTAAAGAAGAAGAATTGAATGAGAATTTCTTCAAGGCACTTGCTCATGCTCAAGAAATTCATGCCAACTGCAAAGTACTGCTCAGGACACACCATCAGCGTGCAGGTCTGGAGTTGATGGATATGATGGCTATGTATCAAGAGGGAGCTTATGAGCGTCTATGCAGGTGGGTTCAAGCTGAATGTAGGAGACTGGGGGACACTGATAATCCTGAAGTTAGTGAACTTCTGAGAACGTCAGTCCGCTGTCTTAAAGAAAGGCCTGTCCTTTTCAAATACTGTGCCGAGGAGGTAGCAAATATGAGACACAATGCTCTATTCAGGAGGTTTATTAGTGCTCTTACTCGTGGAGGACCTGGTGGTTTACCCAGACCTATCGAAGTACATGCCCACGACCCGTTGCGGTATGTGGGTGATATGCTGGGATGGCTGCATCAGGCATTGGCATCTGAAAGAGAACTTGTCCATGCTTTGCTTGATCCAGATGCCGTGCTAGATACAGGGCCAACAGCACACAAGTTCTCAAAAAACTCTGAGGGTGAACCTGGAAAGTTAGAATCTGATTTAACCTTTGTCCTTGATAGGATTTTTGAAGGAGTTTGCAGGCCGTTTAAAGTTAGAGTGGAACAAGTTTTGCAGTCCCAACCTAGTCTTATAGTTTCATATAAACTTAGCAATCAGCTGGAGTTCTATACGTATACGATAGCTGATTTGCTTGGAAGAGAAACAGCTCTTTGCCACACACTCTGGACTTTAAAGGATGCTGCTCAGAAAACATTCTTTGACATTTTAAAGAGTCGTGGGGAGAAGCTACTGCGTTATCCTCCACTTGTTGCTGTTGATCTTTCACCGCCTCCTGCTGTAAGAGAAGGAGTTTCTGTTCTGCTGGAAATTATAGAGACATATGACAGCATGATGGTTCCTTCTTCAGGAAAGAAACCGGACTTTGATCCTGTGATCTCTGCTTTATTGGATCCTATTATCCAGATGTGTGAGCAAGCAGCAGAGGCACACAAATCCAAAGGGATGGGTCACTCATCGAGAAGAAGTAGAACAAGCTCAGATTCCAATCAGCTTAGCAAATCATCAGTTGATGCAATATTGAGTAGTGGCAGCTCTGGGTCAGCTTCTCAGAGTAGCGAGACACCTTCTAAGATCTTCCTCATCAACTGCTTATGCGCCATCCAGCAACCGCTGATAGGACATGAAGCTGCAGCTCAATATGCGAATAACCTTGGGGAAATGATAGAAAACCACAAGCGTATTCTTGTGGACAAAGAAGCGGAGAACATTCTAAGAAAATGTAATTTGTTGACCAAAATGTCTTTCTTCCAGAAAGTATTTAACAGAGAAGCTGAAGATGCTGCTGATTCTGTGCCTCCATTAGCAGAAATGGAGGAGACTTCTCCAGCTTCATTGTCAGAAAGTTTGAAGGCTTTCTTTGGTCTCGTTTTGGGAACTGAGAATTCCCTCCCAGAATTTGAGCAACTCCAGGTTCCAAAGTTACGATCCGAAGCTTGTATTCATCTGGCTATATCGCTTGCTGAATCATACGACCTTGTACACAACGCAATAATGGATCCCAAGAATGCATATCCAGATCCAAAGTCACTTGCCAGACATCCACCAGATCAGATTAGGACAATTTTGGGTATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_107260.p1 GENE.R_Transcript_107260~~R_Transcript_107260.p1 ORF type:complete len:697 (+),score=142.64,COG6|PF06419.7|5.3e-228 R_Transcript_107260:239-2329(+)
MGTGGALAPGLSRKLKKVLESRIDSPDLLSSLSTLSTFYADNSAQARRNLRSTIEKRSLSINHEFLLASESAQQALDQVEAEVNALADCCDSIAKVLNSCNSTTGDIISTTERLKQDLDVTTQRQEIVACFLRDYQLSNEEITALKEEELNENFFKALAHAQEIHANCKVLLRTHHQRAGLELMDMMAMYQEGAYERLCRWVQAECRRLGDTDNPEVSELLRTSVRCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGLPRPIEVHAHDPLRYVGDMLGWLHQALASERELVHALLDPDAVLDTGPTAHKFSKNSEGEPGKLESDLTFVLDRIFEGVCRPFKVRVEQVLQSQPSLIVSYKLSNQLEFYTYTIADLLGRETALCHTLWTLKDAAQKTFFDILKSRGEKLLRYPPLVAVDLSPPPAVREGVSVLLEIIETYDSMMVPSSGKKPDFDPVISALLDPIIQMCEQAAEAHKSKGMGHSSRRSRTSSDSNQLSKSSVDAILSSGSSGSASQSSETPSKIFLINCLCAIQQPLIGHEAAAQYANNLGEMIENHKRILVDKEAENILRKCNLLTKMSFFQKVFNREAEDAADSVPPLAEMEETSPASLSESLKAFFGLVLGTENSLPEFEQLQVPKLRSEACIHLAISLAESYDLVHNAIMDPKNAYPDPKSLARHPPDQIRTILGI*

Click here to download the sequence:
Link to NCBI Protein BLAST