Transcript Information: R_Transcript_107355.p1


Annotated TAIR IDAT2G16880.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:7312262-7314493 | Reverse length=743
E-Value1.6E-228
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2968920076888
Replicate 21.3491598661075
Replicate 31.7785686486972
Condition 2: 8 Hour
Replicate 12.2289676257198
Replicate 22.1851999657384
Replicate 33.4262076271413
Condition 3: 24 Hour
Replicate 12.8582008998346
Replicate 22.5391596580852
Replicate 33.428194709996


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_107355.p1 GENE.R_Transcript_107355~~R_Transcript_107355.p1 ORF type:complete len:747 (+),score=146.52,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|8.4e-06,PPR_2|PF13041.2|1e-12,PPR_2|PF13041.2|2e-19,PPR_2|PF13041.2|2.3e-12,PPR_2|PF13041.2|3.7e-17,PPR_2|PF13041.2|8e-11,PPR_2|PF13041.2|9.6e-16,PPR_2|PF13041.2|2.1e-18,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|6.8e-14,PPR_2|PF13041.2|5.6e-16,PPR_2|PF13041.2|9.7e-19,PPR_2|PF13041.2|6.1e-09,PPR_2|PF13041.2|4.1e-14,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|0.00035,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|3.3e+03,PPR_1|PF12854.3|4e+03,PPR_1|PF12854.3|2e-06,PPR_1|PF12854.3|1e-10,PPR_1|PF12854.3|1.6e-10,PPR_1|PF12854.3|9.6e-13,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|4.5e-14,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|9.5e-12,PPR_1|PF12854.3|1.1e-09,PPR_1|PF12854.3|4.2e-10,PPR_1|PF12854.3|0.09,PPR_1|PF12854.3|0.56,PPR_1|PF12854.3|3.7e+03,PPR|PF01535.16|9.9e+02,PPR|PF01535.16|0.081,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|2.4e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|5.6e-07,PPR|PF01535.16|3.1e-07,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.0011,PPR|PF01535.16|7.4e-10,PPR|PF01535.16|0.0029,PPR|PF01535.16|0.0028,PPR|PF01535.16|4.8e-07,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|0.024,PPR|PF01535.16|1.5,PPR_3|PF13812.2|24,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|1e-06,PPR_3|PF13812.2|0.095,PPR_3|PF13812.2|0.0063,PPR_3|PF13812.2|8.1e-06,PPR_3|PF13812.2|13,PPR_3|PF13812.2|1.8e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|0.0086,PPR_3|PF13812.2|2,PPR_3|PF13812.2|18,PPR_3|PF13812.2|1.5e-05,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|4e+03,MRP-S27|PF10037.5|6.2,MRP-S27|PF10037.5|1.9,MRP-S27|PF10037.5|0.055,MRP-S27|PF10037.5|0.0083,MRP-S27|PF10037.5|2e+02,ATP13|PF12921.3|1.9e+03,ATP13|PF12921.3|7.4e+03,ATP13|PF12921.3|46,ATP13|PF12921.3|8.9,ATP13|PF12921.3|0.31,ATP13|PF12921.3|1.2e+02,ATP13|PF12921.3|87,TPR_11|PF13414.2|6.4e+03,TPR_11|PF13414.2|5,TPR_11|PF13414.2|30,TPR_11|PF13414.2|29,TPR_11|PF13414.2|2.9e+02,TPR_11|PF13414.2|12,TPR_7|PF13176.2|79,TPR_7|PF13176.2|82,TPR_7|PF13176.2|5.6e+03,TPR_7|PF13176.2|1.2e+03,TPR_7|PF13176.2|64,TPR_7|PF13176.2|8.7,TPR_12|PF13424.2|1.4e+03,TPR_12|PF13424.2|2.3e+03,TPR_12|PF13424.2|33,TPR_12|PF13424.2|4.8e+03,TPR_12|PF13424.2|7.2e+03,TPR_12|PF13424.2|1.2e+03,TPR_12|PF13424.2|36,TPR_12|PF13424.2|13,TPR_12|PF13424.2|1.1e+02 R_Transcript_107355:105-2243(+)
ATGGTTACAACCCCACCAATCCCAAAAACTCCAAACTTATGTCTTTCTTCTCTTCTAAAACTCCTTCCATCCCTTTTCAAGAACAACAAATTCTCAGATGCAAAATCCCTCTTACTTTCCTTCATCTCCACAGACACTTCTCACACTCTTCACAAACACCTCCTTCACCCATCTTCACAATTACCTCAACCAACAACAGCCCTTTATGACACAGCAATTGGTTCATATTGTCAATTGGGTAATCCCCATTTTGCCATCCCCATCTTCAAAAAGATGAAGCGCTTAAGGCTCAAACCAAAGCTCCTAACTTGCAACACTTTGTTCAATTCCCTGGTAAAAAACCCATCATCTCATTCTCTCTATTTTTGTAGGGAATTATTTGATGACATGACTAAAAACCTTGGGATTTCCCCAAATGTTAATACTTTCAATATTTTGATTATTGGGTATTGCTTAGAATTTAGATTTAGGGAGGCTTTGGATATGCTTAGTTTAATGGGGGGTTTTAATTGTTCCCCTGATAATGTCACTTATAATACTGTATTGAATGCTTTGTGTAGAAAAGGTAGGTTGAATGAGGTTAGAGATTTGTTAACTGATATGAAAAGTAAAGGGTTGGTCCCTAATAAGCATACTTATAATATTTTGGTTAATGGGTATTGTAAGATGGGTTGGTTGAAGGAGGCTACTCAGATTATTGATTTGATGACTCAGAATAACTTTTTGCCGGACATTAGGACGTATAATATGTTGATTAGTGGGTTTTGTAATGAAGGGAAGATTGACGAGGCGTCTAGGTTGCGAGATGAGATGGAAAAACTGAAACTTTTGCCGGATGTGGTTACTTATAATACATTGATAAACGGGTGCCTTGAGTACAGGAGCATTGATGAGGCGTTCAATTTGTTTGATGAGATGAGTGATAAGGGTGTGGAGAAAACTGTGGTTACTTATAATGTGATTATCAAGTGGTTTTGCAAGGGTGGCAAGATTGAAGAAGCTGTTAATGAGCTTAGGAAGGTGGAGAAGAGTGGGGTTTCTCCTGATTTTGTGACCTATAATACCTTGATAAATGCGTATTGCAAAGTGGGGAATTTCGCCGAGGCATACAAGATGATGGATGAGATGGGTAGAAAGGGTTTGAAGATGAATGCTTTTACGTTGAATACTTTAATTCATGCGCTTTGTGCGGAGATGAGACTTGAGGAGGCTTATGATTTACTGAAGTGTGGCATTAAGCGGGGCTATGCTGTCAATGAAGTTAGCTATGGTACATTAATTGCAGGTTATTTCACGGATGAAAATGAGGGCCAAGCATTGAATATCTGGGGAGAGATGAAAGAGAGAGGGATCATTCCGAGTATTGTCACATATAATACTGTCATAAAAGGTTTCTGCAAATCAGGAAAAACCAACAAAGCTATTGACAAGTTGAATGAACTTCTGGAAAATGGTGTTTTCCCAGATGAGACTACGTACAACACTATCATCCATGGTTACTGTTGGGAGGGTAAGGTTGAGCAAGCATTTCAGTTCCACAACAAAATGGTTGAGAATTCATTTAAGCCAGATGTGTACACATGTAATATTCTACTGCGGGGACTTTGCTCTGATGGGATGCTTGAAAAAGCTATTAAGCTCTTCAACACCTGGGTCTCAAAAGGAAAAGAAGTTGATGCAATTACCTACAACACACTGATAACTTGTCTTTGCAAGGAAGGCAGGCTTGAGGATGCTTTGATTTTCGTGAAAGACATGGAGGAAAAGAGGTTAGAACCTGATAGGTACACATTTAATGCCATTTTCACTGCACTTCTTAATGCAGGGAGAATGGAGGAAGCAGAAGAAATCCGGGAAAGATTGGTTGAGATTGAAAATCTACAGGATCAACTTCCACTAACTGAGAAGCCTGAAATGGTTCAGACTGGTGATGTCAAAGTGGAGTTAGATTCTAGTTCTGATTCTTTTTCAGAGAAAATAAATAAACTCTGTACAGAAGGCAGATACAAGGATGCAATGGAGGTGTATGAAGAGGCTGCTGGTAAAGGGGTAGCTGTACATAAGACTACTTATTTTACATTGATGAAGGGTTTGCTCAAGAGACGAAAAAGCATATCAAAGAGAGCTCCTCTGCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_107355.p1 GENE.R_Transcript_107355~~R_Transcript_107355.p1 ORF type:complete len:747 (+),score=146.52,PPR_2|PF13041.2|5.4e+03,PPR_2|PF13041.2|4.5e-06,PPR_2|PF13041.2|8.4e-06,PPR_2|PF13041.2|1e-12,PPR_2|PF13041.2|2e-19,PPR_2|PF13041.2|2.3e-12,PPR_2|PF13041.2|3.7e-17,PPR_2|PF13041.2|8e-11,PPR_2|PF13041.2|9.6e-16,PPR_2|PF13041.2|2.1e-18,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|6.8e-14,PPR_2|PF13041.2|5.6e-16,PPR_2|PF13041.2|9.7e-19,PPR_2|PF13041.2|6.1e-09,PPR_2|PF13041.2|4.1e-14,PPR_2|PF13041.2|0.27,PPR_2|PF13041.2|0.00035,PPR_1|PF12854.3|0.22,PPR_1|PF12854.3|3.3e+03,PPR_1|PF12854.3|4e+03,PPR_1|PF12854.3|2e-06,PPR_1|PF12854.3|1e-10,PPR_1|PF12854.3|1.6e-10,PPR_1|PF12854.3|9.6e-13,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|4.5e-14,PPR_1|PF12854.3|1.5e-07,PPR_1|PF12854.3|0.4,PPR_1|PF12854.3|1.5e-09,PPR_1|PF12854.3|9.5e-12,PPR_1|PF12854.3|1.1e-09,PPR_1|PF12854.3|4.2e-10,PPR_1|PF12854.3|0.09,PPR_1|PF12854.3|0.56,PPR_1|PF12854.3|3.7e+03,PPR|PF01535.16|9.9e+02,PPR|PF01535.16|0.081,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|2.4e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|5.6e-07,PPR|PF01535.16|3.1e-07,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.0011,PPR|PF01535.16|7.4e-10,PPR|PF01535.16|0.0029,PPR|PF01535.16|0.0028,PPR|PF01535.16|4.8e-07,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|2.1e-07,PPR|PF01535.16|0.024,PPR|PF01535.16|1.5,PPR_3|PF13812.2|24,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|1e-06,PPR_3|PF13812.2|0.095,PPR_3|PF13812.2|0.0063,PPR_3|PF13812.2|8.1e-06,PPR_3|PF13812.2|13,PPR_3|PF13812.2|1.8e-05,PPR_3|PF13812.2|2e+02,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|0.0086,PPR_3|PF13812.2|2,PPR_3|PF13812.2|18,PPR_3|PF13812.2|1.5e-05,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|4e+03,MRP-S27|PF10037.5|6.2,MRP-S27|PF10037.5|1.9,MRP-S27|PF10037.5|0.055,MRP-S27|PF10037.5|0.0083,MRP-S27|PF10037.5|2e+02,ATP13|PF12921.3|1.9e+03,ATP13|PF12921.3|7.4e+03,ATP13|PF12921.3|46,ATP13|PF12921.3|8.9,ATP13|PF12921.3|0.31,ATP13|PF12921.3|1.2e+02,ATP13|PF12921.3|87,TPR_11|PF13414.2|6.4e+03,TPR_11|PF13414.2|5,TPR_11|PF13414.2|30,TPR_11|PF13414.2|29,TPR_11|PF13414.2|2.9e+02,TPR_11|PF13414.2|12,TPR_7|PF13176.2|79,TPR_7|PF13176.2|82,TPR_7|PF13176.2|5.6e+03,TPR_7|PF13176.2|1.2e+03,TPR_7|PF13176.2|64,TPR_7|PF13176.2|8.7,TPR_12|PF13424.2|1.4e+03,TPR_12|PF13424.2|2.3e+03,TPR_12|PF13424.2|33,TPR_12|PF13424.2|4.8e+03,TPR_12|PF13424.2|7.2e+03,TPR_12|PF13424.2|1.2e+03,TPR_12|PF13424.2|36,TPR_12|PF13424.2|13,TPR_12|PF13424.2|1.1e+02 R_Transcript_107355:105-2243(+)
MVTTPPIPKTPNLCLSSLLKLLPSLFKNNKFSDAKSLLLSFISTDTSHTLHKHLLHPSSQLPQPTTALYDTAIGSYCQLGNPHFAIPIFKKMKRLRLKPKLLTCNTLFNSLVKNPSSHSLYFCRELFDDMTKNLGISPNVNTFNILIIGYCLEFRFREALDMLSLMGGFNCSPDNVTYNTVLNALCRKGRLNEVRDLLTDMKSKGLVPNKHTYNILVNGYCKMGWLKEATQIIDLMTQNNFLPDIRTYNMLISGFCNEGKIDEASRLRDEMEKLKLLPDVVTYNTLINGCLEYRSIDEAFNLFDEMSDKGVEKTVVTYNVIIKWFCKGGKIEEAVNELRKVEKSGVSPDFVTYNTLINAYCKVGNFAEAYKMMDEMGRKGLKMNAFTLNTLIHALCAEMRLEEAYDLLKCGIKRGYAVNEVSYGTLIAGYFTDENEGQALNIWGEMKERGIIPSIVTYNTVIKGFCKSGKTNKAIDKLNELLENGVFPDETTYNTIIHGYCWEGKVEQAFQFHNKMVENSFKPDVYTCNILLRGLCSDGMLEKAIKLFNTWVSKGKEVDAITYNTLITCLCKEGRLEDALIFVKDMEEKRLEPDRYTFNAIFTALLNAGRMEEAEEIRERLVEIENLQDQLPLTEKPEMVQTGDVKVELDSSSDSFSEKINKLCTEGRYKDAMEVYEEAAGKGVAVHKTTYFTLMKGLLKRRKSISKRAPLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST