Transcript Information: R_Transcript_1077.p1


Annotated TAIR IDAT1G75850.1
Annotated Gene NameVPS35 Homolog B
Annotated Gene Symbol(s)VPS35B
Annotation TypeOrtholog
Chromosome Positionchr1:28478053-28483874 | Reverse length=790
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.770180871381
Replicate 211.079911680641
Replicate 313.761352434968
Condition 2: 8 Hour
Replicate 111.317773848412
Replicate 212.194284429765
Replicate 315.842652594368
Condition 3: 24 Hour
Replicate 115.989505537683
Replicate 211.972061186195
Replicate 313.397260047647


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_1077.p1 GENE.R_Transcript_1077~~R_Transcript_1077.p1 ORF type:complete len:794 (+),score=159.34,Vps35|PF03635.13|7.3e-276 R_Transcript_1077:161-2542(+)
ATGATAGTGGACGGAATTGAAGACGAAGAGAAATGGCTTGCAGAAGGCATCGCTTCTGTTCAACACAATGCCTTCTTTATGCACCGTGCTTTGGATTCGGATAGTTTAAGAGAAGCGCTCAAGTTCTCCGCTCAAATGTTATCGGAGCTCCGTACCTCCAAGCTCTCTCCTCACAAGTACTTTGAGCTCTATATGCGAACATTTGATGAATTGAGGAAACTTGAGATGTTCTTCAAGGAAGAGAGTAGACATGGAGTAACAGTTGTTGATCTCTATGAACTTGTTCAGCATGCTGGCAATGTCTTGCCTAGGCTGTACCTGCTTTGCACCGTGGGGTCTGTTTACATCAAATCGAAGGAGGTCCCCACAAAGGATATCCTCAAAGATCTTGTTGAAATGTGTCGTGCTGTTCAACATCCTATACGGGGACTTTTCTTGAGGAGCTACCTTTGTCAAGTCACTCGAGACAAACTACCTGATATTGGATCAGAGTATGCAGGGGATGGTGACACTGTGATGGATGCTGTGGACTTTGTGCTGCAAAACTTCACAGAGATGAATAAGCTCTGGGTTCGGTTGCAACAGCAGGGGCCTGTTCGGGTAAAAGAGAAACGAGAAAAGGAGAGGAATGAACTTCGTGATCTTGTTGGAAAGAATCTGCATATTCTCAGTCAAATAGAGGGTGTAGACCTTGAAATGTACAGAGATACTGTTCTCCCCAGAATCCTAGAACAGGTTATCAACTGTAAAGATGAGCTAGCCCAAAACTATTTGATGGATTGTATCATCCAAGTTTTTCCGGATGAGTATCACTTGCAAACGCTTGACATATTATTAGGTGCTTGTCCACAGCTTCAGCCAACAGTTGACGTCAAATTGGTGCTGTCTCAATTGATGGATAGACTTTCAAATTATGCTGCATCAAGTCCAGAAGTGTTACCAGAATTCCTGCAAGTAGAAGCTTTTGCAAAGCTGAATAATGCCATTGGGAAGGTGATTGAGGGACAGGTTGACATGCCCATTGTTGGAGCCATTACTTTATATACCTCACTTCTTACGTTTGCTCTCCGTGTCCATCCTGATCGGCTTGACTATGTGGATCTGGTGCTGGGTGCATGTGTCAGGAAACTTTCTGGCAAACCAAAGCTTAACGACAGCAGGGCAACAAAACAAATCATTGCACTTTTGAGTGCTCCACTGGAAAAGTATAATGATGCTGTTACGACCTTGACGCTTTCTAATTATCCCCGTGTAATGGAATATCTTGATAATGATACCAACAAAGTCATGGCCATGGCTATCATACAAAACATTTTAAAGAATGATACTTGCATTTCTACAGCTGATCAGGTGGAGGCATTATTTGAGTTAATCAAAGGGCTTATTACAGATATAGATGACTCTGTCGATGAGCTTGATGAGGAGGATTTCAAGGAATATCAGAATTCTGTTGCTCGTCTTATACACATGCTATATAATGATGACCCTGATGAAATGTTAAAGATTATATGTACTGTAAGGAGACATATAATGGCTGGAGGACAGAAACGATTACCTTTCACTATTCCATCTCTTGTTTTTTCTGCACTCAAGTTAGTCTGGCGGTTACAAGGTCAAGATGGTGAAGCTGATGGAGAAGAAGCTCCTGCAACACCTAAGAAAATCTTTCAGCTTGTAAATCAGATTGTTGAAGCTCTTTCATGTGTTCCATCTCCTGATCTGGCGTTGAGGCTATATTTGCAGTGTGCTGAGGCTGCGAATGATTTTGATCTTGAGCCAATGGCATATGAATTTTTCACCCAGGCCTTTATATTGTACGAGGAAGAAATTGCGGATTCGAAGGCCCAATTTACTGCCATACATCTTATAATTGGGACTCTACAGAGGATGAATGTATTTGGTGTGGAGAACAGAGACACTCTAACCCATAAGGCAACAGGGTACTCAGCAAAACTCCTGAAGAAGGCTGATCAGTGTAGAGCAGTTTATGCTTGCTCTCATCTCTTTTGGACAGATAACCAGGATGGTATAAAGGATGGAGAAAGGGTCCTGCTATGCCTGAAGCGTTCATTAAGGATTGCAAATGCAGCTCATCAGATGGCCAGTGTCACACGTGGAAGTAGTGGGCCGGTTACCTTGTTTGTTGAAATTCTAAACAATGGCCATTGCAGGTACCTTTATTACTTCGAAAAGGGAAATCCCCAGGTCACTAGCTCCGCGATCCAGGATCTCGTGGAGTTGATAAGAACTGAGATGCAAAGTGACACATCAACTCCGGATCCTGCTACCACCACTTTCTTCAACAGCACTTTGCGGTATATCCAATTCCAGAAACAGAAAGGTGGCTTGATGGGCGAAAAGTATGGTCCTATTAAGTTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_1077.p1 GENE.R_Transcript_1077~~R_Transcript_1077.p1 ORF type:complete len:794 (+),score=159.34,Vps35|PF03635.13|7.3e-276 R_Transcript_1077:161-2542(+)
MIVDGIEDEEKWLAEGIASVQHNAFFMHRALDSDSLREALKFSAQMLSELRTSKLSPHKYFELYMRTFDELRKLEMFFKEESRHGVTVVDLYELVQHAGNVLPRLYLLCTVGSVYIKSKEVPTKDILKDLVEMCRAVQHPIRGLFLRSYLCQVTRDKLPDIGSEYAGDGDTVMDAVDFVLQNFTEMNKLWVRLQQQGPVRVKEKREKERNELRDLVGKNLHILSQIEGVDLEMYRDTVLPRILEQVINCKDELAQNYLMDCIIQVFPDEYHLQTLDILLGACPQLQPTVDVKLVLSQLMDRLSNYAASSPEVLPEFLQVEAFAKLNNAIGKVIEGQVDMPIVGAITLYTSLLTFALRVHPDRLDYVDLVLGACVRKLSGKPKLNDSRATKQIIALLSAPLEKYNDAVTTLTLSNYPRVMEYLDNDTNKVMAMAIIQNILKNDTCISTADQVEALFELIKGLITDIDDSVDELDEEDFKEYQNSVARLIHMLYNDDPDEMLKIICTVRRHIMAGGQKRLPFTIPSLVFSALKLVWRLQGQDGEADGEEAPATPKKIFQLVNQIVEALSCVPSPDLALRLYLQCAEAANDFDLEPMAYEFFTQAFILYEEEIADSKAQFTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKADQCRAVYACSHLFWTDNQDGIKDGERVLLCLKRSLRIANAAHQMASVTRGSSGPVTLFVEILNNGHCRYLYYFEKGNPQVTSSAIQDLVELIRTEMQSDTSTPDPATTTFFNSTLRYIQFQKQKGGLMGEKYGPIKL*

Click here to download the sequence:
Link to NCBI Protein BLAST