Transcript Information: R_Transcript_108005.p1


Annotated TAIR IDAT5G66350.1
Annotated Gene NameLateral root primordium (LRP) protein-related
Annotated Gene Symbol(s)SHI
Annotation TypeOrtholog
Chromosome Positionchr5:26504714-26506143 | Reverse length=331
E-Value1.7E-62
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.5888051920877
Replicate 20.40638000805738
Replicate 30.73892701923072
Condition 2: 8 Hour
Replicate 10.94783993344175
Replicate 20.2885275076282
Replicate 30.46842866117128
Condition 3: 24 Hour
Replicate 11.4811488534003
Replicate 21.4229199284243
Replicate 31.4121099797998


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_108005.p1 GENE.R_Transcript_108005~~R_Transcript_108005.p1 ORF type:internal len:155 (+),score=21.35,DUF702|PF05142.8|2.9e-60 R_Transcript_108005:3-464(+)
AAGAAAGATTGTGCTCATTTGAGGTGTAGGACTTGTTGTAAAAGCCGGGGTTTTGATTGTCCTACTCACGTGAAGAGCACGTGGGTACCTGCTGCTAAGCGCCGTGAAAGGCAACAACAACTTGCTGCCCTCCAACAACAACAACCAGGAGAACAACAACAACATCAACATCCTTCCGAGCTTCACCAACAACAGCAACAAATGGAGATCATGAGAGAGAAACGGACGCGAGAGAATCGCACCACCGCAGTCGGAGCTCCCAACACGTCAGGGTTGGAAGTTGGTAACTTTCCGCCGGAGGTGAACTCATCAGCGGTGTTCCGTTGCGTAAGGGTGAGTGCTATTGACGATCCAGACGAACAATTTGCATACCAAACGGCCGTCAACATTGGGGGACACGTGTTCAAGGGGATACTCTATGATCAGGGTCCTGACAGCAGCAGGTACGCTGCTGGTGAGAGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_108005.p1 GENE.R_Transcript_108005~~R_Transcript_108005.p1 ORF type:internal len:155 (+),score=21.35,DUF702|PF05142.8|2.9e-60 R_Transcript_108005:3-464(+)
KKDCAHLRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQQLAALQQQQPGEQQQHQHPSELHQQQQQMEIMREKRTRENRTTAVGAPNTSGLEVGNFPPEVNSSAVFRCVRVSAIDDPDEQFAYQTAVNIGGHVFKGILYDQGPDSSRYAAGES

Click here to download the sequence:
Link to NCBI Protein BLAST