Transcript Information: R_Transcript_108176.p1


Annotated TAIR IDAT1G31340.1
Annotated Gene Namerelated to ubiquitin 1
Annotated Gene Symbol(s)RUB1, NEDD8, ATRUB1
Annotation TypeOrtholog
Chromosome Positionchr1:11218076-11219417 | Reverse length=156
E-Value1.8E-104
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1162.02628354326
Replicate 2223.86466425596
Replicate 3208.25257787187
Condition 2: 8 Hour
Replicate 1163.1272920458
Replicate 2182.66492061133
Replicate 3158.30856751114
Condition 3: 24 Hour
Replicate 1185.54940088144
Replicate 2196.7852779552
Replicate 3179.89894263203


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_108176.p1 GENE.R_Transcript_108176~~R_Transcript_108176.p1 ORF type:5prime_partial len:219 (+),score=31.88,ubiquitin|PF00240.19|1.2e-31,ubiquitin|PF00240.19|4.5e-27,Rad60-SLD|PF11976.4|3.1e-15,Rad60-SLD|PF11976.4|2.5e-14,Ubiquitin_2|PF14560.2|0.00015,Ubiquitin_2|PF14560.2|0.00093,Rad60-SLD_2|PF13881.2|0.26,Rad60-SLD_2|PF13881.2|0.13 R_Transcript_108176:2-658(+)
TTCGGGCGCTTTCCCCTAATGTGCCCCACGCAACCCACTTCCACCTCCAAGTATAGTCACTCTCCACTATTGACTAGCATAAGTGTGCATAACTCATTGTTCTTCTGTACTTGTACGCTAACTCATTCCCATTTTCATTTTCATTTTCATTCACTCCTTCCCCAAAAACCCCAACCCAGCTCAACAAATATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACCATAACCCTAGAAGTCGAATCAAGCGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAACGGCTAATCTTCGTCGGAAAACAGCTCGAAGATGGCCGAACCCTAGCCGACTACAACATCCAAAAGGAGTCAACTTTACACCTGGTTTTGAGGCTAAGAGGGGGCACAATGATCAAGGTCAAAACCCTAACTGGAAAGGAGATCGAGATTGATATCGAACCCACTGATACCATTGATCGTATTAAGGAAAGGGTTGAGGAGAAAGAAGGGATTCCACCTGTTCAACAGAGGTTGATTTATGCTGGCAAACAACTTGCTGATGATAAGACTGCTAAGGATTATAATATTGAGGGTGGGTCTGTTCTTCATCTTGTTCTTGCTCTTAGGGGTGGTGCTGGGTTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_108176.p1 GENE.R_Transcript_108176~~R_Transcript_108176.p1 ORF type:5prime_partial len:219 (+),score=31.88,ubiquitin|PF00240.19|1.2e-31,ubiquitin|PF00240.19|4.5e-27,Rad60-SLD|PF11976.4|3.1e-15,Rad60-SLD|PF11976.4|2.5e-14,Ubiquitin_2|PF14560.2|0.00015,Ubiquitin_2|PF14560.2|0.00093,Rad60-SLD_2|PF13881.2|0.26,Rad60-SLD_2|PF13881.2|0.13 R_Transcript_108176:2-658(+)
FGRFPLMCPTQPTSTSKYSHSPLLTSISVHNSLFFCTCTLTHSHFHFHFHSLLPQKPQPSSTNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFVGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGGAGF*

Click here to download the sequence:
Link to NCBI Protein BLAST