Transcript Information: R_Transcript_108199.p1


Annotated TAIR IDAT3G46640.3
Annotated Gene NameHomeodomain-like superfamily protein
Annotated Gene Symbol(s)PCL1
Annotation TypeOrtholog
Chromosome Positionchr3:17183248-17184989 | Forward length=324
E-Value3.8E-72
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3319728264254
Replicate 20.51072082093698
Replicate 30.557190914501
Condition 2: 8 Hour
Replicate 15.2280630563037
Replicate 27.6147867891605
Replicate 37.6531115048118
Condition 3: 24 Hour
Replicate 11.9855400845582
Replicate 21.6690466187464
Replicate 30.94649533781178


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_108199.p1 GENE.R_Transcript_108199~~R_Transcript_108199.p1 ORF type:5prime_partial len:370 (+),score=8.77,Myb_DNA-binding|PF00249.27|1.2e-07 R_Transcript_108199:1-1110(+)
CTTTTTTGTTTTCTCTCTCCTTTCTTTCACCCAAATAATTTTCCTCAAAAAGATCCGAACTTTCAATTACTTTCCTCTTCAGTAAGCTCCGATCAAATCAATTCAATTCAACTCAGCTCAAAGCGATTCATTCGTTCGTTTTTAGCTCTAATGGGCGAAGTAAACGGCGTCGTTAACGGCGTTATAGAAGAAGAGGAGAGAGTTCACGAGTGGGAAGCAGGATTACCTAACATCGACGACATAACGCCGTTAAATCATGGATTAATCTCACCGGAACTCTTATCGGCGTTCAATATAAAGCCGGAACCCTACCGGAGCAACGGCGACCTCTCACGAGCTTGTCAAGACACAATCTCAGCAATCCGAGGCCAATCTCCCGCCACGAATTTCAAGTCTTTTAACGAGAATCAACAAATAATCGCCGACGATGAAGAAATCGACGAAGAAATCGACGACGGCGGCGGCAACGGTGGTGAGGATGAGCAGCCGGAAGACGACGGTTCCGATACGAAGAAGCCTCGCAGGAACAAGTCGCCGGAGGACGCTGACTCGGCGGCGGCGAAGACGTTGAAGCGGCCGAGACTCGTCTGGACACCTCAGCTACACAAGAGGTTTGTGGATGTGGTGACTCACTTAGGGATTAAGAACGCCGTTCCTAAAACGATTATGCAGTTGATGAATGTTGAGGGTTTGACCAGAGAGAACGTCGCTAGCCACTTGCAGAAGTACCGGCTTTATCTAAAGAGGATGCAGGGAGTTTCGTTTGACGCACCTTCGAGTTCTTCGCCGGCGGCACCGTTGCCGGCCCCGGAGAATTTAATGTCGTCGGAAAATGGGAGCCGGAGCGGCAGCGGGAATGGGAACGGGCCGGTGCCGATGCCATACGCTCCGACTCCGATGATGCCGGTGCCGATGCCAATGATGGGAATGGGGAATTTCAATGGGTTTGAGTCGCATCATAATCATTATAATTTGCAAAATCATCATCATCATCATCAGTATAATAATGGAAGTATGCAGTCAGGGTCAGGGACCAAATATGGTTCAGTTGTTTCTTACCATCAGCACCACCATCACCACCCTCCTCATGTTGCTCCTGGTGATAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_108199.p1 GENE.R_Transcript_108199~~R_Transcript_108199.p1 ORF type:5prime_partial len:370 (+),score=8.77,Myb_DNA-binding|PF00249.27|1.2e-07 R_Transcript_108199:1-1110(+)
LFCFLSPFFHPNNFPQKDPNFQLLSSSVSSDQINSIQLSSKRFIRSFLALMGEVNGVVNGVIEEEERVHEWEAGLPNIDDITPLNHGLISPELLSAFNIKPEPYRSNGDLSRACQDTISAIRGQSPATNFKSFNENQQIIADDEEIDEEIDDGGGNGGEDEQPEDDGSDTKKPRRNKSPEDADSAAAKTLKRPRLVWTPQLHKRFVDVVTHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGVSFDAPSSSSPAAPLPAPENLMSSENGSRSGSGNGNGPVPMPYAPTPMMPVPMPMMGMGNFNGFESHHNHYNLQNHHHHHQYNNGSMQSGSGTKYGSVVSYHQHHHHHPPHVAPGDK*

Click here to download the sequence:
Link to NCBI Protein BLAST