Transcript Information: R_Transcript_108776.p1


Annotated TAIR IDAT5G53490.3
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21723488-21724621 | Reverse length=250
E-Value9E-104
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.5536774358741
Replicate 26.3435631044986
Replicate 36.3359061436166
Condition 2: 8 Hour
Replicate 112.08663971864
Replicate 215.414735567115
Replicate 311.663375334802
Condition 3: 24 Hour
Replicate 15.8615678028181
Replicate 23.6602344541809
Replicate 35.6814893017053


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_108776.p1 GENE.R_Transcript_108776~~R_Transcript_108776.p1 ORF type:complete len:235 (+),score=51.94,Pentapeptide|PF00805.18|5.7e+03,Pentapeptide|PF00805.18|2e-06,Pentapeptide|PF00805.18|1.5e-06,Pentapeptide|PF00805.18|2.5e-08,Pentapeptide_3|PF13576.2|0.00044,Pentapeptide_3|PF13576.2|6.7e-06,Pentapeptide_3|PF13576.2|7.5e-05,Pentapeptide_4|PF13599.2|4.2e+03,Pentapeptide_4|PF13599.2|0.0037,Pentapeptide_4|PF13599.2|3.6e-09 R_Transcript_108776:571-1275(+)
ATGGCGACCCTTGGCATTTCCCTTCACCCAACTGGCATCTCCGTTAGAAACTTGTCACTCAAACGCCTTCATTTCTCAGCTCCTAAATCTACACTCAGGATCTACTGCTCAGCAACTGGAAATGGCAGTGGCAAAGAGAACTCGTCTCAGCTCAAAGAACTTCGGAGCGTGGCATTTGGCCTCCTGGCTACATGGGCCATTACTGCTGCCTCACCTGTAGTAGCTGCTAATCAGAGATTGCCTCCATTGTCAACAGAGCCCAACCGCTGTGAGCGTGCATTTGTTGGTAACACGATTGGTCAAGCGAATGGTGTCTATGACAAGCCTTTAGATCTCCGTCAATGTGACTACACAAATGATAAGTCTAACCTCAAGGGGAAGACTCTTTCAGCCGCTCTCATGTCAGATGCTAAGTTTGATGGTGCAGACATGACAGAAGTGGTCATGTCCAAGGCTTATGCTGTGGGAGCTAGCTTCAAGGGAGTAGACTTCTCAAATGCAGTTCTGGATCGTGTCAATTTTGGAAAGGCCAATCTTCAGGGAGCTGTGTTTAAGAACACCGTGTTGTCAGGCTCCACCTTTGTGGAAGCTCAGCTGCAAGATGCTGTGTTTGAGGACACCATTATCGGTTACATTGATCTGCAGAAGCTGTGTACGAATAAAACCATCAGCGATGAAGTTAGACTTGAACTTGGATGTCGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_108776.p1 GENE.R_Transcript_108776~~R_Transcript_108776.p1 ORF type:complete len:235 (+),score=51.94,Pentapeptide|PF00805.18|5.7e+03,Pentapeptide|PF00805.18|2e-06,Pentapeptide|PF00805.18|1.5e-06,Pentapeptide|PF00805.18|2.5e-08,Pentapeptide_3|PF13576.2|0.00044,Pentapeptide_3|PF13576.2|6.7e-06,Pentapeptide_3|PF13576.2|7.5e-05,Pentapeptide_4|PF13599.2|4.2e+03,Pentapeptide_4|PF13599.2|0.0037,Pentapeptide_4|PF13599.2|3.6e-09 R_Transcript_108776:571-1275(+)
MATLGISLHPTGISVRNLSLKRLHFSAPKSTLRIYCSATGNGSGKENSSQLKELRSVAFGLLATWAITAASPVVAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRQCDYTNDKSNLKGKTLSAALMSDAKFDGADMTEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGAVFKNTVLSGSTFVEAQLQDAVFEDTIIGYIDLQKLCTNKTISDEVRLELGCR*

Click here to download the sequence:
Link to NCBI Protein BLAST