Transcript Information: R_Transcript_108804.p1


Annotated TAIR IDAT3G09650.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)HCF152, CRM3
Annotation TypeOrtholog
Chromosome Positionchr3:2958704-2961040 | Forward length=778
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.2117320066277
Replicate 23.148076333604
Replicate 34.4200745296357
Condition 2: 8 Hour
Replicate 14.0543739873535
Replicate 25.0727424255102
Replicate 34.4728219129767
Condition 3: 24 Hour
Replicate 14.7292484250029
Replicate 23.076809258529
Replicate 34.0236849554792


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_108804.p1 GENE.R_Transcript_108804~~R_Transcript_108804.p1 ORF type:5prime_partial len:767 (+),score=158.60,PPR_2|PF13041.2|6e+03,PPR_2|PF13041.2|9e+02,PPR_2|PF13041.2|8.6e-11,PPR_2|PF13041.2|3.8e+02,PPR_2|PF13041.2|0.0035,PPR_2|PF13041.2|7.9e-15,PPR_2|PF13041.2|1.6e-12,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|0.08,PPR_2|PF13041.2|4.5e-12,PPR_2|PF13041.2|9.4e+03,PPR_2|PF13041.2|3.3,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|0.0059,PPR|PF01535.16|0.2,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|0.016,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|4e-06,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|0.00062,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|2.5,PPR|PF01535.16|8.5,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|5.4,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|4.3e-07,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|0.00029,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|1.6e-07,PPR_1|PF12854.3|1.3,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|2.6e-07,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|6.9e-05,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|4.1e+02,PPR_3|PF13812.2|0.19 R_Transcript_108804:3-2303(+)
CAATCTCATTACCCGAATGGACCAAATCTAATCATGAATACCAAATTCCCAACCCCATCTTCTTCAACCTCAACTTCAACCTCCTTACCACTCACCTCTACCAGTTTCCCAGCTTTCCTCCGAGTAGTATCTCCATGTCCACCACTTTCAAATTCAATCTCCACCCACAGCCACAGCAACCGACCTCAATCATCCATCACCACTGCGACTACAAACCCAACTCCTCCTCCTACTACTACTACAAAGCACCTTGATCAAACCCTGCTTTCTCTCCTTCAGCGCAGGCAAACTGAACAAGCTTGGCTCTTTTACTCCCAATTACCTCATCTCCCTAACCCCACTTGCCTTAGTCGTTTAGTCTCTCAACTTTCTTATCAAAATACTCCTCTCTCCTTCTCCCGTGTTCAATCCATTGTCTCTCGTCTCAGACATGAATCTCAACTTCACCGCCTTGATTCCAACTCTCTTGGCTTATTGGCTGTCTCTGCTCTTAAATTTGGTCATACCCTCTATGCCCTTTCCATTATTAAGTCTATGCTTCGTTCTAATTATCTCCCCCATGTTAAGGCTTGGAGTGCTCTAGTTAGCCGCCTTTCTGCTTCCCCTGATGATGCTCCTCTTGAGTCTATACGCCTCTTTGAGCTAATTGCCAACCGGGTTCAAACCCATGTCGACAATCCAGCCCTCGTGGCCCACTCCAAACCCGACACCGCCGCCTTCAATGCTGTCCTCAATGCCTGTGCCAATATGGGCGACATTGATAAGTTCCACCAACTGTTTGATCAAATGCCTGAGTTCCAAGTTATGCCTGATGCTCTTACTTACAATGTTATGATTAAGTTATGTGCTAGAGTTGATAGGAAGGACCTGCTTGTTTGTGTGTTGGAGTTGATGTTGAGTAAAGGGGTTGAGCCTTGTGTTACTACCTTGCATTCTCTTGTTGCTGCTTATGTTGGTTTCGGTGAGTTGGGGGTCGCGGAGCAGTTGGTCCAGGCGTTGCGTGATGGGAGGACCGATGTGTGTAGGGTTCTGAGGGATGCAAATGCTGGTGAGGATGAGCTTGATGAGGATGTGATTGATCATAGTGAACAAGACAAGTGTGAAAATGATGTGTTTGAGAAGTTGCTTCCTAGTGTGATTCGTGTGAGTTCAGAGCCACCTCCATTATTGCCTAGATCATATTCGCCAAATTCTAGGATGTATACGACGTTGATGAAGGGATACATGAAAGCGGGAAGAGTAGCTGACACAGTGAGGATGCTTGAGGCAATGAGGTGTCAGGAGGATAGTGCTAGCCATCCTGATCATGTCTCCTATACAACAGTGATTTCGGCTTTTGTCAAAGCAGGATCAATGGACAAGGCCAGGCAGGTCCTCGCTGAAATGACGAGAATCGGTGTGCCAGCTAATCGTATCACATATAATATTCTGCTCAAGGGTTATTGCCAGCAGTTGCAAATTGATAAAGCAAAGGAATTGGTCAAGGAGATGACTAATGATGTTGAGATTTCGCCTGATGTGGTGTCATACAATACATTGATTGATGGGTGCATATTGGTGGATGATAGTGCAGGAGCTCTCGCATTCTTCAATGAGATGAGAGCACGAGGAATTGCTCCGACAAAAATTAGTTACACCACTTTGATGAAGGCTTTTGCCTTGTCTGGGCAACCGAAATTGGTAAACAAGGTGTTTGATGAGATGCTGAAGGATCCAAGGGTAAAAGTTGATCAGGTTGCTTGGAATATGTTGGTTGAAGGGTACTGCAAGATGGGTTTAATCGAGGAAGCCAAGAAGATTGTTGAGAGAATGAGGGAGCACGGGTTTCACCCTAATGTTGCCACGTATGGGAGCCTTGCTAATGGAATTGCGTTAGCAAGGAAGCCAGGTGAAGCATTACTTCTTTGGAATGAAGTGAAGGAGAGATGTGCAGCAAGGGGAGAAAAAGATGAGTTGGAATCTTCATTGCCACCACCAATAAAGCCTGATGAAGGGCTACTAGATACTTTAGCTGATATTTGTGTAAGAGCCGCCTTTTTCAAGAAAGCATTGGAGATTGTGGCATGCATGGAAGAGAACGGAATTTCACCAAATAAGACCAAATTTACAAGGATTTATGTTGAGATGCACTCTAGGATGTTTACAAGTAAGCATGCATCTAAAGCCAGGCAAGATAGAAGACGCGAGAGGAAGAGGGCAGCAGAAGCATTCAAATTTTGGTTGGGATTACCCAATGATTATTATGCAAGTGAATGGAGTCTTGATCCAGGTGATCGTGATTATGAATCTGAATCTCTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_108804.p1 GENE.R_Transcript_108804~~R_Transcript_108804.p1 ORF type:5prime_partial len:767 (+),score=158.60,PPR_2|PF13041.2|6e+03,PPR_2|PF13041.2|9e+02,PPR_2|PF13041.2|8.6e-11,PPR_2|PF13041.2|3.8e+02,PPR_2|PF13041.2|0.0035,PPR_2|PF13041.2|7.9e-15,PPR_2|PF13041.2|1.6e-12,PPR_2|PF13041.2|7.2e-14,PPR_2|PF13041.2|0.08,PPR_2|PF13041.2|4.5e-12,PPR_2|PF13041.2|9.4e+03,PPR_2|PF13041.2|3.3,PPR|PF01535.16|7.7e+02,PPR|PF01535.16|0.0059,PPR|PF01535.16|0.2,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|0.016,PPR|PF01535.16|1.2e-06,PPR|PF01535.16|4e-06,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|0.00062,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|2.5,PPR|PF01535.16|8.5,PPR_1|PF12854.3|0.2,PPR_1|PF12854.3|5.4,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|4.3e-07,PPR_1|PF12854.3|1.7e-08,PPR_1|PF12854.3|0.00029,PPR_1|PF12854.3|0.04,PPR_1|PF12854.3|1.6e-07,PPR_1|PF12854.3|1.3,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.00017,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|0.23,PPR_3|PF13812.2|2.6e-07,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|0.0022,PPR_3|PF13812.2|6.9e-05,PPR_3|PF13812.2|0.0039,PPR_3|PF13812.2|4.1e+02,PPR_3|PF13812.2|0.19 R_Transcript_108804:3-2303(+)
QSHYPNGPNLIMNTKFPTPSSSTSTSTSLPLTSTSFPAFLRVVSPCPPLSNSISTHSHSNRPQSSITTATTNPTPPPTTTTKHLDQTLLSLLQRRQTEQAWLFYSQLPHLPNPTCLSRLVSQLSYQNTPLSFSRVQSIVSRLRHESQLHRLDSNSLGLLAVSALKFGHTLYALSIIKSMLRSNYLPHVKAWSALVSRLSASPDDAPLESIRLFELIANRVQTHVDNPALVAHSKPDTAAFNAVLNACANMGDIDKFHQLFDQMPEFQVMPDALTYNVMIKLCARVDRKDLLVCVLELMLSKGVEPCVTTLHSLVAAYVGFGELGVAEQLVQALRDGRTDVCRVLRDANAGEDELDEDVIDHSEQDKCENDVFEKLLPSVIRVSSEPPPLLPRSYSPNSRMYTTLMKGYMKAGRVADTVRMLEAMRCQEDSASHPDHVSYTTVISAFVKAGSMDKARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELVKEMTNDVEISPDVVSYNTLIDGCILVDDSAGALAFFNEMRARGIAPTKISYTTLMKAFALSGQPKLVNKVFDEMLKDPRVKVDQVAWNMLVEGYCKMGLIEEAKKIVERMREHGFHPNVATYGSLANGIALARKPGEALLLWNEVKERCAARGEKDELESSLPPPIKPDEGLLDTLADICVRAAFFKKALEIVACMEENGISPNKTKFTRIYVEMHSRMFTSKHASKARQDRRRERKRAAEAFKFWLGLPNDYYASEWSLDPGDRDYESESL*

Click here to download the sequence:
Link to NCBI Protein BLAST