Transcript Information: R_Transcript_108935.p7


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.7294147222009
Replicate 21.7660439602494
Replicate 31.712653278217
Condition 2: 8 Hour
Replicate 113.501551699883
Replicate 216.927396533982
Replicate 317.303404516631
Condition 3: 24 Hour
Replicate 11.9310305144798
Replicate 20.41224782973042
Replicate 31.2273479263681


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_108935.p7 GENE.R_Transcript_108935~~R_Transcript_108935.p7 ORF type:complete len:107 (+),score=8.93,UBN2_3|PF14244.2|3.3e-28,Retrotrans_gag|PF03732.13|5.8e-06 R_Transcript_108935:4745-5065(+)
ATGGAGATAGCCTTGGCCACTAAGCTCAAACTTGGATTTGTTACTGGTACGGTTACTAGATCTGAAACTGATTTTGTTAAGGCTGAACAATGTGATACATGTAATTCTCTGATTATAGCCTGGTTGTTAAACTCTATGATTGAATCAATTAGAAAATCTGTCTTGTACTATGATTCTGCTCATTCTATGTGGTTACATCTTGAGAAAAGGTTCTCCATTAACAATGGCTCCAGGAAATATAAATTGAATAAGGATGTATATGATCTAAGGCAGAATGGAAATAGTATTAGTGAATTTTATACCAGAATGAGGTGTCTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_108935.p7 GENE.R_Transcript_108935~~R_Transcript_108935.p7 ORF type:complete len:107 (+),score=8.93,UBN2_3|PF14244.2|3.3e-28,Retrotrans_gag|PF03732.13|5.8e-06 R_Transcript_108935:4745-5065(+)
MEIALATKLKLGFVTGTVTRSETDFVKAEQCDTCNSLIIAWLLNSMIESIRKSVLYYDSAHSMWLHLEKRFSINNGSRKYKLNKDVYDLRQNGNSISEFYTRMRCL*

Click here to download the sequence:
Link to NCBI Protein BLAST