Transcript Information: R_Transcript_109271.p1


Annotated TAIR IDAT3G24320.1
Annotated Gene NameMUTL protein Homolog 1
Annotated Gene Symbol(s)MSH1, CHM1, ATMSH1, CHM
Annotation TypeOrtholog
Chromosome Positionchr3:8823229-8829571 | Reverse length=1118
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1827307680416
Replicate 21.8671513883718
Replicate 32.9157660758834
Condition 2: 8 Hour
Replicate 12.6898160273347
Replicate 22.124966103478
Replicate 32.6744744506063
Condition 3: 24 Hour
Replicate 14.1632292095575
Replicate 23.2111841627955
Replicate 34.5034858815238


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_109271.p1 GENE.R_Transcript_109271~~R_Transcript_109271.p1 ORF type:complete len:1147 (+),score=242.63,MutS_V|PF00488.17|1.9e-40,MutS_I|PF01624.16|4.3e-10 R_Transcript_109271:156-3596(+)
ATGTACTGGTTTAGTACTATGAAAGCTGTTGCGGTTTCGGTTTCGGTTTCGGTTTCGGTTTCGCTACCGAGATGGCGACCTCTAGCGCTTCTTCTCCGTTCGCACGTCAATGGCTACTCTCCTCTCTCCTCTCCTCCGTTTTTCCTAAACAGGCAAAATGGACAAATCCGTTGTTTCAGGGACAAGAAAGGTCCAAAAGGAGCAACGAGGACAGCCAAAAAAGTAAAGGACTGGAGAAATGCTTTGGACGAAAAGGATATTTCCCATATTTTATGGTGGAAGGAGAGGTTGGAGATGTGCAGAAAACCTTCAACAGTTCAGCTGCTCAAGAGACTTGTTTACTCCAATCTGCTTGGGTTGGATGTTGACCTGAAAAATGGGAGACTAAAAGAAGGAACCCTTAACTGGGAAATGCTGCAATTTAAGTCAAGGTTCCCACGTGAAGTTCTGTTATGTAGAGTTGGGGATTTTTATGAGGCAATAGGTATTGATGCATGTCTTCTCGTTGAATATGCTGGATTAAATCCATTTGGTGGTTTGCGGTCAGATAGTATCCCAAGAGCTGGCTGCCCTGTTGTGAATTTACAACAAACTCTGGATGACCTGACACGCAATGGCTTTTCTGTTTGCATAGTTGAGGAAGTACAGGGTCCAACTCAAGCTCGTTCGAGGAAAGGCCGATTTATATCTGGGCATGCACATCCAGGGAACCCATATGTGTTTGGACATGTTGGTGTTGATCGTGATCTTGATTTTCCAGAACCAATGCCTGTTGTTGGGATATCTCGTTCTGCAAAAGGCTACTCTTTAGTCTCAATCTTGGAGACCTTGAAGACGTTTTCTGTTGAGGATGGTTTAACTGAAGAAGCATTAGTCACAAAGCTTCGTACTTGTCGCTGCCATTATTTGTTTCTTCATGCATCATTGAAACACAATTCTTCAGGAACGTGTCGGTGGGGAGAATTTGGTGAGGGAGGGTTACTGTGGGCAGAATGCAGTTCCCGACACTTTGAATGGTTTGAAGGTGACCCTGTCAAAGAGCTTTTGCTTAAGGTTAAGGAAGTCTATGGTCTTGATGATGAAGTTACATTTAGAGATATTGCAATTCCTTCTAAAGAAAGGCCCCGGCCTTTACATCTAGGAACTGCTACACAGATTGGTGCCATACCAACGGAAGGAATACCTTGTCTGCTGAAAGTATTGCTTCCATCGACTTGCAGCGGCTTACCACTATTATATGTCAGAGATCTCCTGCTCAACCCTCCTGCCTATGACATAGCATCTACAATTCAAGAAATATGCAAACTCATGAGCAATGTGACCTGCTCAATTCCCGAATTCACATGTGTATCATCTGCAAAGCTTGTCAAGTTAATTGAGCTTAGGGAGGCTAATCATATTGAGTTCGGCAGAATAAAAAACGTTGCTGAAGAAATATTACAGTTGCATAATAACTCTGAGCTTTGTGAGATCCTCAAACTATTGATGGATCCTACTTGGGTGGCAACTGGATTGAAGCTTGACTTTGATACTCTGGTGAATGAATGTGAATGGGTTTCACATAGAATTGGTGAGCTGATCTCAGTGGATGGTGAGGTTGATCAGGAAACAAGTTCCTTACCTCTCATTCCAAGTGATTTTTTTGAGGACATCGAGTCCGTTTGGAAAGGACGTGTAAAAAGAAAGCATATGGAAGATTTATTTGAAGAGGTTGAAGAAGCAGCCAAGTCTCTCCAGTCGGCGGTTTCTGAGGATTTCCTTCCAGTTATTTCCAGAATAAGAGCTACCACAGCACCATTTGGTGGTCCCAAGGGCGAAATATTGTATGCTCGGGAGCATGAAGCTGTTTGGTTCAAAGGGAAGCGTTTTGCACCATCTGTATGGGCTGGGACACCTGGGGAAGTACAAATAAAAGAGCTGAAACACGCATTAGATTCAAAAGGGAGGAAAGTTGGGGAGGAATGGTACACCACAGCAAAAGTAGAGGATGCACTGATGAGGTATCATGAAGCCAATGAAAAGGCTAGGGTCAAAGTTCTTGAATTATTGAGGGGGCTGTCAGCTCAGTTACAGTCTAAAATTAATGCGCTCGTCTTTGCCTCCATGTTGCTTATCATTGCAAAGGCCCTTTTTGCCCATGTGAGTGAAGGGAGGAGAAGAAAATGGGTCTTTCCTACACTGGTGGAATTCAGTAGCTCTGAGAATGGAAAGCATTATGATGAAGTCATAAACATGGAGATTAGAGGCCTATCGCCGTATTGGTTTAATGTGTCACAGGGCGATGCTGTGTGTAATACAATCAGGATGGAGTCATTATTTCTTCTAACAGGACCCAATGGAGGTGGTAAATCAAGTCTACTGAGATCAGTTTGTGCAGCTGCTTTACTTGGAATATGTGGCTTTATGGTTCCTGCAGAATCAGCTTTGATTCCTCATTTTGACGCTATTATTCTCCACATGAAATCTTATGATAGTCCTGTTGATGGAAAAAGTTCTTTTCAGATAGAAATGTCAGAGATTCGTTCACTACTATCTGCAACCACATCAAGAAGTCTTGTTCTTATTGATGAAATCTGTCGAGGAACAGAAACAGCCAAGGGAACATGTATTGCTGGGAGTATTGTTGAAACTCTGGATGCAGTTGGCTGTTTGGGTATTGTATCAACTCACTTGCATGGGATATTTGATTTACCACTGAGGACAAAGAAAACTGTTTACAAGGCAATGAGCACAGAATTTGTTGATGGCCAAACTGTCCCAACTTGGAAGTTGATAGATGGAATCTGTAGAGAAAGCCTTGCATTTGAAACTGCCAAGAGAGAAGGTCTATCTGAAACAGTAGTGCAACGAGCCGAAGAATTATATAGTTCAGTTTATGCAAATGAGAAGGGCTTACAAGATAAAAAGCCCAGGGATTCTATTTCTGAAGTAAATGTTAATGGTTCTAGTGAAGCTCAGGGCAAGACTAGGACTACCTGTTCTAATATCAACTCAGTTGCCCAAATTGAGATCTTAAAGGAAGAGGTTGAAAGTGCCGTTACTGCTTTGTGCCAGAAGAAGATGATTGAACTTTACAAACTGGCGAACTCGTCTCAGATTCCAGTGATTAAATGCATATGTATTGCTGCTAGGGAACAGCCACCTCCATCAACCATAGGTGCTTCAAGTGTTTATGTGATCTTACGGCCTGACAAGAAATTATATGTTGGAGAGACGGATGATCTCCAAGGTAGAGTCCATGCTCATCGATCGAAGGAAGGTATGCAGAATGCTGTGTTCCTTTCTTTCACAGTCCAAGGGAAAAGCGTTGCATGCCAGCTTGAGACCCTTCTGATCAATCAACTCCCAAAACAAGGATTTCATCTCACTAACATTGCTGATGGTAAGCATCGGAATTTCGGTACATCTGATGCCATCTTAGTGTCAGTTACTGCGTTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_109271.p1 GENE.R_Transcript_109271~~R_Transcript_109271.p1 ORF type:complete len:1147 (+),score=242.63,MutS_V|PF00488.17|1.9e-40,MutS_I|PF01624.16|4.3e-10 R_Transcript_109271:156-3596(+)
MYWFSTMKAVAVSVSVSVSVSLPRWRPLALLLRSHVNGYSPLSSPPFFLNRQNGQIRCFRDKKGPKGATRTAKKVKDWRNALDEKDISHILWWKERLEMCRKPSTVQLLKRLVYSNLLGLDVDLKNGRLKEGTLNWEMLQFKSRFPREVLLCRVGDFYEAIGIDACLLVEYAGLNPFGGLRSDSIPRAGCPVVNLQQTLDDLTRNGFSVCIVEEVQGPTQARSRKGRFISGHAHPGNPYVFGHVGVDRDLDFPEPMPVVGISRSAKGYSLVSILETLKTFSVEDGLTEEALVTKLRTCRCHYLFLHASLKHNSSGTCRWGEFGEGGLLWAECSSRHFEWFEGDPVKELLLKVKEVYGLDDEVTFRDIAIPSKERPRPLHLGTATQIGAIPTEGIPCLLKVLLPSTCSGLPLLYVRDLLLNPPAYDIASTIQEICKLMSNVTCSIPEFTCVSSAKLVKLIELREANHIEFGRIKNVAEEILQLHNNSELCEILKLLMDPTWVATGLKLDFDTLVNECEWVSHRIGELISVDGEVDQETSSLPLIPSDFFEDIESVWKGRVKRKHMEDLFEEVEEAAKSLQSAVSEDFLPVISRIRATTAPFGGPKGEILYAREHEAVWFKGKRFAPSVWAGTPGEVQIKELKHALDSKGRKVGEEWYTTAKVEDALMRYHEANEKARVKVLELLRGLSAQLQSKINALVFASMLLIIAKALFAHVSEGRRRKWVFPTLVEFSSSENGKHYDEVINMEIRGLSPYWFNVSQGDAVCNTIRMESLFLLTGPNGGGKSSLLRSVCAAALLGICGFMVPAESALIPHFDAIILHMKSYDSPVDGKSSFQIEMSEIRSLLSATTSRSLVLIDEICRGTETAKGTCIAGSIVETLDAVGCLGIVSTHLHGIFDLPLRTKKTVYKAMSTEFVDGQTVPTWKLIDGICRESLAFETAKREGLSETVVQRAEELYSSVYANEKGLQDKKPRDSISEVNVNGSSEAQGKTRTTCSNINSVAQIEILKEEVESAVTALCQKKMIELYKLANSSQIPVIKCICIAAREQPPPSTIGASSVYVILRPDKKLYVGETDDLQGRVHAHRSKEGMQNAVFLSFTVQGKSVACQLETLLINQLPKQGFHLTNIADGKHRNFGTSDAILVSVTAL*

Click here to download the sequence:
Link to NCBI Protein BLAST