Transcript Information: R_Transcript_109399.p1


Annotated TAIR IDAT4G18240.1
Annotated Gene Namestarch synthase 4
Annotated Gene Symbol(s)ATSS4, SSIV, SS4
Annotation TypeOrtholog
Chromosome Positionchr4:10082221-10087044 | Forward length=1040
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8767452932455
Replicate 22.6245375520373
Replicate 34.371514808426
Condition 2: 8 Hour
Replicate 12.3598018699158
Replicate 22.2403555279814
Replicate 33.04836208892
Condition 3: 24 Hour
Replicate 14.8193870134493
Replicate 23.4934856639655
Replicate 34.8035993110557


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_109399.p1 GENE.R_Transcript_109399~~R_Transcript_109399.p1 ORF type:complete len:1048 (+),score=243.28,Glyco_transf_5|PF08323.7|1.7e-67,Glycos_transf_1|PF00534.16|6.5e+03,Glycos_transf_1|PF00534.16|8.5e-11,Tropomyosin_1|PF12718.3|13,Tropomyosin_1|PF12718.3|13,Tropomyosin_1|PF12718.3|2.5e-06,Glyco_trans_4_4|PF13579.2|2.8e-05 R_Transcript_109399:164-3307(+)
ATGGCGGCAAATCTCACAACGTGTTTCTTAAGCCACGGTACCTGGATCGGATCGAGCTCCAATCACTCGAATATGCATTTCGCTGAGTTTTCTCACCACCATCGCTTCTTTTCTCCTTCTTGCAAAATGCGTCAGCGTAATCTCAGTTCTCAACACAAAAGACAGCTGGTAAAGAAAGTATCTCCTGAGAAGCCTCGGATAGATGCAAAATTGCAACCAAATGGTGATTCAGAGGGGGACTCTGAGGGTGCCTCTGTCAATGGTGCCTCAAGTTCAAGACAGGATATTATACCCAACAATGATGTTGACAAAAGAATGGTAACTGAGCAAGTTGAGCAGAATAGCTTGGATGATTTGACAAAGGTACATGATGACATAGTTTTACTGCCTCCCCCACAAGTCAACAGTTCAACCATAATTGAACTAGATAGGAACAGTGTGCCATACAGTCATACACCCAGCAATGATCCTAAGAATTTGTCCATTGACCTATTTGGTGGAGAGAAGCAAGGATCAATTCAATTTGAAGATTTGATCACCATGATTAGAAATGCAGAGAGAAATGTCCTTCTACTCAATCAAGCTCGGGTTCGAGCCCTTAAAGATCTGGATACAATACTTCATGAGAAAGAAGCTTTGCAGGGAGAAATCAATGTCTTGGAGATGAAACTGGCAGAAACTGATGCAAAAATCAAACTTGCTGCACAGGAGAAGATACATGTTGAACTTCTTAAAGAACAGCTGGAGAACATGAGGAAAGAATTTTCTGAGAGGAGTGGGGCCCAGGGAGAGGTATATGAAATTTCTGGCTATGATGTTCCTCAACCTCAATCATGGAACAGTGATTTATTACATCTAAGCAAGGAGCTTAGTTCACTGAAGGCAGAGAATATATCCTTGAAGGATGATATAAGAGCTCTTAATGATGTACTTAGTAATGTTAATGAAACTGATGAACGGGTAGCTATCCTCGAGAAAGAGCGTCTGCTTTTAGAGGTTTCCGTGAAAGAATTGGAGTCCAAACTTCAAGCATCTCAGGAAGATGTGAATAAACTTTCTGCAATGAAACACGAATATAATAGCTTGTGTGAGAAAGTCTTGAATTTACAGGCCTTGCTCAACAATGCAACCAAGCAAGCTGACCAAGCTATCTTAGTCTTGCATCAAAATCAGGAACTACGTAAGAAGGTGGAGAGGTTGGAAGAGTCTCTCACTGAAGCAAATGTCTACAAGTCATCGTCAGAGAAGTTGCAAAAATACAATGAATTAATGCAAGAAAAAATAAAGTTTTTGGAGGAGCGCCTTGAAAAGTCTGATGAAGAGATAAACTCTTACATTCACTTGTACCAAGACTCTATGAAGGAATTCCAAGACACACTTGATAATCTGAAAAAAGAAAGCCAGAAAAGGGCTCCTGATGAACCAGTAGAGGATATGCCTTGGGAATTTTGGAGTCAAATGCTGCTAAGAATTGATGGCTGGTTGCTTGAGAAAAAATTGCCAGCAAATGATGCAAAGATGTTGAGGGAAATGGTGTGGAAAAGAGAGCGCCGTATTTATGATGCATACATGGAATGTAAAGAAAAGACTGAACATGACTTGTTGGCTACATTCTTAAGTCTGACATCTTCACCTGCATGGTCAGCGTTACATGTTATTCACATTGCAGCAGAGATGGCACCAGTTGCAAAGGTTGGTGGTCTTGGAGATGTTGTGACGGGTCTTGGGAAGGCACTTCAGAAGAAAGGACACCTCGTGGAAATTATACTTCCAAAGTATGATTGTATGCAGTACGACCTCATTCATGACTTACGGGCTTTGGATGTGGAAGTAGAGTCATATTTTGATGGACACCTATTCAAGAACAAGATATGGGTCGGCACAGTTGAAGGTCTTCCTGTTTATTTTATTGAGCCCCATCATCCTGGTAAGTTCTTCTGGAGGGGACAACTTTATGGAGAGAATGATGACTTCAAGAGGTTTTCATTTTTCAGCCGGGCAGCACTTGAATTGCTCCTTCAGTCTGGGAAGAAACCAGATATAATACATTGCCATGATTGGCAAACAGCTTTTGTGGCACCATTATACTGGGATCTCTATGCACCGAAAGGATTGAATTCAGCAAGGATTTGTTTTACGTGCCACAACTTTGAGTATCAAGGTGTTGCTCCAGCTCCAGAACTTGCTTCATGTGGTCTTGATGTTTATCAGCTCAATAGACCAGACAGGATGCAGGACAACTCAGCTGATGATAGGATTAATCCTGTCAAGGGTGCAGTTGTATTCTCCAACATTGTCACAACAGTTTCACCCACCTATGCCCAGGAAGTCAGAACCCCTGAGGGCGGAAGAGGCCTTCACACGACACTTAATTCTCACTCTAGAAAGTTCATAGGAGTTCTGAATGGCATTGATATTGATGCATGGAACCCTGCCACTGATTCATTTATTGATGTGCAATACAATTCAAGTGATCTTCAGGGTAAAAAAGCCAATAAGGGAGCTCTCAGGAAGCGTCTTGGGCTCTCTGACAGGGATCCCAGGCAGCCGCTGGTTGGTTGCATAACAAGGCTCGTTCCACAAAAGGGGGTCCATCTTATAAGACATGCTATATATCGAACACGAGAGCTTGGAGGGCAATTTGTTCTTCTTGGGTCCAGTCCTGTGCCTCATATACAGAGGGAATTTGAGGGCATTGCAAGCCAGTTTCAGAATGAAGAAAATGTTCGATTGATATTGAAGTATGATGAGTTACTCTCCCGTTCCATTTATGCTGCATCTGATATATTCATCATCCCATCTATATTTGAGCCATGTGGGCTGACACAGATGATAGCAATGAGATATGGTTCAATACCCATTGCAAGAAAGACCGGTGGATTAAATGACAGTGTTTTTGATGTTGATGATGAAATTGTTCCACTTCAGTTTCGGAATGGATTTACATTTTTTTCACCTGATGAACAGGGCTTAAACAGTGCTCTAGACCGTGCATTACGCTACTACATGAACAATAGAGAGAGTTGGGAGGAACTTGTTCAGAAGGTTATGCGCATGGATTTTAGCTGGGAATCTTCAGCCTCACAGTACGAGGAACTCTATGCCAGATCTGTAGCACGAGCAAGGGCAGCAAAACGTGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_109399.p1 GENE.R_Transcript_109399~~R_Transcript_109399.p1 ORF type:complete len:1048 (+),score=243.28,Glyco_transf_5|PF08323.7|1.7e-67,Glycos_transf_1|PF00534.16|6.5e+03,Glycos_transf_1|PF00534.16|8.5e-11,Tropomyosin_1|PF12718.3|13,Tropomyosin_1|PF12718.3|13,Tropomyosin_1|PF12718.3|2.5e-06,Glyco_trans_4_4|PF13579.2|2.8e-05 R_Transcript_109399:164-3307(+)
MAANLTTCFLSHGTWIGSSSNHSNMHFAEFSHHHRFFSPSCKMRQRNLSSQHKRQLVKKVSPEKPRIDAKLQPNGDSEGDSEGASVNGASSSRQDIIPNNDVDKRMVTEQVEQNSLDDLTKVHDDIVLLPPPQVNSSTIIELDRNSVPYSHTPSNDPKNLSIDLFGGEKQGSIQFEDLITMIRNAERNVLLLNQARVRALKDLDTILHEKEALQGEINVLEMKLAETDAKIKLAAQEKIHVELLKEQLENMRKEFSERSGAQGEVYEISGYDVPQPQSWNSDLLHLSKELSSLKAENISLKDDIRALNDVLSNVNETDERVAILEKERLLLEVSVKELESKLQASQEDVNKLSAMKHEYNSLCEKVLNLQALLNNATKQADQAILVLHQNQELRKKVERLEESLTEANVYKSSSEKLQKYNELMQEKIKFLEERLEKSDEEINSYIHLYQDSMKEFQDTLDNLKKESQKRAPDEPVEDMPWEFWSQMLLRIDGWLLEKKLPANDAKMLREMVWKRERRIYDAYMECKEKTEHDLLATFLSLTSSPAWSALHVIHIAAEMAPVAKVGGLGDVVTGLGKALQKKGHLVEIILPKYDCMQYDLIHDLRALDVEVESYFDGHLFKNKIWVGTVEGLPVYFIEPHHPGKFFWRGQLYGENDDFKRFSFFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGVAPAPELASCGLDVYQLNRPDRMQDNSADDRINPVKGAVVFSNIVTTVSPTYAQEVRTPEGGRGLHTTLNSHSRKFIGVLNGIDIDAWNPATDSFIDVQYNSSDLQGKKANKGALRKRLGLSDRDPRQPLVGCITRLVPQKGVHLIRHAIYRTRELGGQFVLLGSSPVPHIQREFEGIASQFQNEENVRLILKYDELLSRSIYAASDIFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDVDDEIVPLQFRNGFTFFSPDEQGLNSALDRALRYYMNNRESWEELVQKVMRMDFSWESSASQYEELYARSVARARAAKRA*

Click here to download the sequence:
Link to NCBI Protein BLAST