Transcript Information: R_Transcript_109511.p1


Annotated TAIR IDAT3G51690.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:19176731-19178107 | Reverse length=331
E-Value1E-57
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.201092350422
Replicate 21.6055994435993
Replicate 31.1453368798076
Condition 2: 8 Hour
Replicate 10.86420699813807
Replicate 22.2360881841186
Replicate 32.5091932328182
Condition 3: 24 Hour
Replicate 11.4855051735573
Replicate 21.1676313530306
Replicate 34.1200385292983


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_109511.p1 GENE.R_Transcript_109511~~R_Transcript_109511.p1 ORF type:5prime_partial len:340 (+),score=29.44,PIF1|PF05970.10|2.7e-61,Herpes_Helicase|PF02689.10|5.9e+02,Herpes_Helicase|PF02689.10|1.5e-05 R_Transcript_109511:1-1020(+)
GCCGAACCGACTCCGACTTTGGCAAATTTAAGGCAACGACTTGGCTCGGCTCGGCTTGTATCCGACCGAGCTGAGCCAATCAATTCTTCCCTCATTTGGAATTATTGTAAAGTAATGCGGCTCACCGTAAATATGCGACTTCAGTCGTCAAGCTCACCTATTCATGTCAATGCTATACAAGATTTTGCAGATTGGATATTAAAGGTTGGGAATGGTGATGTCGGGGAAGATGAAGATGGCATTGCTGAATTCGAGGTTCCTAATGATATAGTGATAAATTCCAATGTGAAAAATCCGATTGCTACGATTGTTGAGAATACCTATCCAAATTTACAGGACATGTTGTATGATTCTTTGTACTTTCAGCAAAGGGCAATATTAGGACCGACTAATGAAGTTGTCGAGGATATTAACTCATACATGTTGGATTTATTACCCGGTGAAAAGAAAGTATATAGAAGCTATGATTCAGTTTGTCCTGAGGATATGCCAAATGCTGCAGATGATGAGGTATATTCAGTTGAATATTTGAATAGTTTGAAGTTTTCTGGGTTGCCGAACCATGAAATTACATTGAAAGTTGGCGCTCCAATCATGTTGCTAAGAAATATTGATTGCTCAGGTGGTTTATGTAATGGAACAAGATTACGTATAACCAGGTTGGGTAATAATGTTATTGAAGCAGATGTACTCACTGGCAGTCGAATTGGAACCAAGGTATTCATACCTCGATTTTCATTAACGCCATCTGATACACATTTACCGTTCAAGTTTAGTCGGCGACAATTTCCTGTCAGGATATGTTTCGCTATGACTATTAATAAAAGTCAAGGACAGTCTCTTGAACGTGCTGGTGTTTATTTACCTTCACCCGTTTTCACACATGGCCAGCTTTATGTTGCCATTTCACGTGTAACAAATAGAGAAGGGTTGAAATTTCTCATATTAGATGAAAATGGCAGACCATGTAATACAACACTGAATGTAGTGTACAAAGAGATATTCAAAAATATCTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_109511.p1 GENE.R_Transcript_109511~~R_Transcript_109511.p1 ORF type:5prime_partial len:340 (+),score=29.44,PIF1|PF05970.10|2.7e-61,Herpes_Helicase|PF02689.10|5.9e+02,Herpes_Helicase|PF02689.10|1.5e-05 R_Transcript_109511:1-1020(+)
AEPTPTLANLRQRLGSARLVSDRAEPINSSLIWNYCKVMRLTVNMRLQSSSSPIHVNAIQDFADWILKVGNGDVGEDEDGIAEFEVPNDIVINSNVKNPIATIVENTYPNLQDMLYDSLYFQQRAILGPTNEVVEDINSYMLDLLPGEKKVYRSYDSVCPEDMPNAADDEVYSVEYLNSLKFSGLPNHEITLKVGAPIMLLRNIDCSGGLCNGTRLRITRLGNNVIEADVLTGSRIGTKVFIPRFSLTPSDTHLPFKFSRRQFPVRICFAMTINKSQGQSLERAGVYLPSPVFTHGQLYVAISRVTNREGLKFLILDENGRPCNTTLNVVYKEIFKNIS*

Click here to download the sequence:
Link to NCBI Protein BLAST