Transcript Information: R_Transcript_109563.p1


Annotated TAIR IDAT5G52180.1
Annotated Gene NameLOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21200165-21201541 | Reverse length=458
E-Value1E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.16745835738274
Replicate 20
Replicate 30.84061422371202
Condition 2: 8 Hour
Replicate 10.44928192563753
Replicate 20.41029140993001
Replicate 30.66611415120686
Condition 3: 24 Hour
Replicate 11.0531104232892
Replicate 21.011709123421
Replicate 30.40160926031004


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_109563.p1 GENE.R_Transcript_109563~~R_Transcript_109563.p1 ORF type:5prime_partial len:109 (-),score=12.61 R_Transcript_109563:422-748(-)
CTTTACTATGATAGCTATAGAAGTTGCTTTAATTCCTTTGTTATTTCTTGTTCTTGCTTTTGTTTGCATAAGTATTTGAATGTGGGTGTCGATGATAATGATAATGATAATGATGGGTCTGGGGTGTTAAAAAATGGGTCTTTAGTTCCAATTGTAATTGGGGTTTTGGGTTTGTTTAGGGTTCTGATTTCACTGTTTCGATTTTCGCTCGAAAGATCTGCTTTTAAGAGGAGTGAAAGGCAATTGGGATTGGTGGTTGGGGTTTTGGGTTTTTTTTGTAGGACTTGTGATCTGCTTGGGGGTGTATCCTTGGTTGTTCGACTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_109563.p1 GENE.R_Transcript_109563~~R_Transcript_109563.p1 ORF type:5prime_partial len:109 (-),score=12.61 R_Transcript_109563:422-748(-)
LYYDSYRSCFNSFVISCSCFCLHKYLNVGVDDNDNDNDGSGVLKNGSLVPIVIGVLGLFRVLISLFRFSLERSAFKRSERQLGLVVGVLGFFCRTCDLLGGVSLVVRL*

Click here to download the sequence:
Link to NCBI Protein BLAST