Transcript Information: R_Transcript_109566.p1


Annotated TAIR IDAT4G20740.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:11126151-11128334 | Forward length=727
E-Value5e-316
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8387146297528
Replicate 22.1054785932778
Replicate 32.4246686034925
Condition 2: 8 Hour
Replicate 12.5918185738031
Replicate 22.6783228946267
Replicate 33.261222520933
Condition 3: 24 Hour
Replicate 13.741035439612
Replicate 22.918174922848
Replicate 34.999420012049


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_109566.p1 GENE.R_Transcript_109566~~R_Transcript_109566.p1 ORF type:complete len:718 (+),score=148.69,PPR_2|PF13041.2|11,PPR_2|PF13041.2|0.24,PPR_2|PF13041.2|9.1e-11,PPR_2|PF13041.2|5.8e-05,PPR_2|PF13041.2|7e-15,PPR_2|PF13041.2|5.1e-06,PPR_2|PF13041.2|0.088,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|2.5e+03,PPR_2|PF13041.2|1.4e-12,PPR_2|PF13041.2|0.00019,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|2.7e-05,PPR|PF01535.16|2.2e+03,PPR|PF01535.16|10,PPR|PF01535.16|0.0015,PPR|PF01535.16|7.7e-07,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|3.9e-05,PPR|PF01535.16|0.035,PPR|PF01535.16|0.0005,PPR|PF01535.16|4.8e+02,PPR|PF01535.16|9.8e-07,PPR|PF01535.16|0.64,PPR|PF01535.16|4,PPR|PF01535.16|0.46,PPR|PF01535.16|0.0058,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.0007,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|0.00021,PPR_3|PF13812.2|0.84,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.007,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|0.84,PPR_3|PF13812.2|0.058,PPR_1|PF12854.3|3.6,PPR_1|PF12854.3|4.8e-08,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|7.2e-09,PPR_1|PF12854.3|6.5,PPR_1|PF12854.3|7.7e-06,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|6.5e+02,PPR_1|PF12854.3|0.0045 R_Transcript_109566:163-2316(+)
ATGCCACCTCCCACCAAACCCAACAAATTCTATTTCTATTATGGCAAAAGGAAACCATCCCAGAACAGACCCACTGTCTATGGTGGTCTCTTCTCAAACCGCCAAACCCTAAACCCTCCTAAAACCCCAAACCCCAAAGAACCCACAGTTTTCACCCTTAAAAACTGGGACCCAGATGCCCAAACCACCCTCAAACCCTCAAATCCTAAAACCCCATCTGAGTATTTCTTCCAAATTGCCCAAAGACTCTCCCCAATTGCCCGTTTCATTTGTGACTCTTTCAGGAAGCACAAGAGATGGGGCCCAGAAGTAGTGTCGGATCTCGGTAAGCTCCGTCGGGTCAACCCGGATCTTGTTGCTGAGGTCCTTAAGGTCCATGATGACCCTGTCATGTCATCCAGGTTCTTTCATTGGGCTGGTAAGCAAAAAGGTTATAAGCATACTTATGTTTCCTATAATGCATTTGCTTATTGTTTGAACCGGTTGAACCGGTTCAGGGCCGCTGATCAAGTCCCTGAACTAATGCATATGCAGGGTAGGCCACCTAGTGAGAAACAGTTTGAAATCTTGATTAGAATGCATGCTGATAATAATAGGGGACTTAGAGTGTATTATGTGTATGAGAAAATGAAGAAATTTGGGGTTAAACCTCGAGTATTTTTGTATAATAGGGTAATGGATGCGTTGGTGAAGACGGGTCATTTGGAATTGGCAATGTCGGTTTATGATGATTTTAAGAAGGATGGGTTGGTGGAGGAGACTGTGACTTATATGATCTTGATTAAGGGTTTGTGTAAGGCTGGGAGGATCGATGAGATGTTGGAGCTTTTGGGGAGAATGAGGTGTTTGTGTAAACCGGATGTGTTTGCATACACTGCAATGATTAAGGTGTTGGTGGCGGAGGGGAATTTGGATGGGTGTTTGAGGGTTTGGGGTGAGATGAAGAAGGATGGTGTCGAGCCAGATGCAATGGCTTATAGTACTTTGATCACGGCATTGTGTAAGGGGAATAGGGTAGAGAAAGGTTATGAGTTGTTTGAGGGTATGAAGAAGAACGCAAACTTGATTGATCGAGCTATATATGGTGCGCTAGTGGAGGGTTTTGTGGCTGATGGTAAGGTTGGTTCGGCACTTGATTTGTTAAAGGATATGATGTATTCTGGGTACAGGGCTGATTTGTCGATCTATAATTCCTTGATAGAGGGGCTGTGTAATGTGAAACAGCTTGATAAGGCTCTTAGGCTCTTCCAAGTAACAGTTCAGGAGGGTCTCCAGCCAGATTTTGATACTGTGAATCCAATGTTAGTGTCTTATGCAGAATCAAGCGCAATGGATGGGTTCATCAATTTGGTTCTGGAGATGCAGAAATTAGGATTGCCTGTTATTGATGGTCTTTCGAGCTTCTTCTCTCTGATGGTTGAGAAGGATGAGAGATTGTCTCTCACATTGGAGGTGTTTGAAGATCTGAAGATCCAAGGGTACTGTAATGTTTCAATCTACAATATTCTTTTAGGTGCTCTTTACAAGAGTGGGCAGACAAAGGAAGCATTGTCCCTCTTCAACGAAATGAAAGGTTCTGATTTTGAACCTGATTCAACTACATATAGTCATGTGATTACTTGTCTTGTTGATCTCGAGGACATCGAAGAGGCATGTGTGTGGTATAATAAAATAAAGGAGATGGACTGGGTTCCATCTATTGCAGCTTATTGTTCTTTGGCAAGAGGGCTTTGCAAAACCAGAGAAATTGATGCAGCAATTTCAATAGTTCAGGACTGTTTAGCTAATGTTACCAGTGGGCCCATGGAGTTCAAATATGCTCTTAACATCATCCATGCATGCAAGTCGAATGATGCTGAGAAAGTGCTTGAAGTCATTAATGAGATGATGGAACAAGGCCATCTACCTGATGAAATTAATTACTGTGCTGTTATCCATGGCATGAGCAAGTATGGGACCATAGAGGAGGCCAGGAAGGTATTCTCGTATATGAAGGAGCGTGAAATTCTAAATGAAGCCAATGTGATTTTATATGATGACACACTTGTTGAGCACACAAAGAAGAAGACAGCAGACATGGTGCTGTCAGGGATAAAGTTCTTTGGACTAGAATCCAAGCTGAAATCGAAAGGTTGTACATTTCTGTCAGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_109566.p1 GENE.R_Transcript_109566~~R_Transcript_109566.p1 ORF type:complete len:718 (+),score=148.69,PPR_2|PF13041.2|11,PPR_2|PF13041.2|0.24,PPR_2|PF13041.2|9.1e-11,PPR_2|PF13041.2|5.8e-05,PPR_2|PF13041.2|7e-15,PPR_2|PF13041.2|5.1e-06,PPR_2|PF13041.2|0.088,PPR_2|PF13041.2|1.4e-07,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|2.5e+03,PPR_2|PF13041.2|1.4e-12,PPR_2|PF13041.2|0.00019,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|2.7e-05,PPR|PF01535.16|2.2e+03,PPR|PF01535.16|10,PPR|PF01535.16|0.0015,PPR|PF01535.16|7.7e-07,PPR|PF01535.16|1.6e-05,PPR|PF01535.16|3.9e-05,PPR|PF01535.16|0.035,PPR|PF01535.16|0.0005,PPR|PF01535.16|4.8e+02,PPR|PF01535.16|9.8e-07,PPR|PF01535.16|0.64,PPR|PF01535.16|4,PPR|PF01535.16|0.46,PPR|PF01535.16|0.0058,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|2,PPR_3|PF13812.2|0.0007,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|0.00021,PPR_3|PF13812.2|0.84,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|0.007,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|0.84,PPR_3|PF13812.2|0.058,PPR_1|PF12854.3|3.6,PPR_1|PF12854.3|4.8e-08,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|7.2e-09,PPR_1|PF12854.3|6.5,PPR_1|PF12854.3|7.7e-06,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|1.4e+02,PPR_1|PF12854.3|2.1,PPR_1|PF12854.3|6.5e+02,PPR_1|PF12854.3|0.0045 R_Transcript_109566:163-2316(+)
MPPPTKPNKFYFYYGKRKPSQNRPTVYGGLFSNRQTLNPPKTPNPKEPTVFTLKNWDPDAQTTLKPSNPKTPSEYFFQIAQRLSPIARFICDSFRKHKRWGPEVVSDLGKLRRVNPDLVAEVLKVHDDPVMSSRFFHWAGKQKGYKHTYVSYNAFAYCLNRLNRFRAADQVPELMHMQGRPPSEKQFEILIRMHADNNRGLRVYYVYEKMKKFGVKPRVFLYNRVMDALVKTGHLELAMSVYDDFKKDGLVEETVTYMILIKGLCKAGRIDEMLELLGRMRCLCKPDVFAYTAMIKVLVAEGNLDGCLRVWGEMKKDGVEPDAMAYSTLITALCKGNRVEKGYELFEGMKKNANLIDRAIYGALVEGFVADGKVGSALDLLKDMMYSGYRADLSIYNSLIEGLCNVKQLDKALRLFQVTVQEGLQPDFDTVNPMLVSYAESSAMDGFINLVLEMQKLGLPVIDGLSSFFSLMVEKDERLSLTLEVFEDLKIQGYCNVSIYNILLGALYKSGQTKEALSLFNEMKGSDFEPDSTTYSHVITCLVDLEDIEEACVWYNKIKEMDWVPSIAAYCSLARGLCKTREIDAAISIVQDCLANVTSGPMEFKYALNIIHACKSNDAEKVLEVINEMMEQGHLPDEINYCAVIHGMSKYGTIEEARKVFSYMKEREILNEANVILYDDTLVEHTKKKTADMVLSGIKFFGLESKLKSKGCTFLSG*

Click here to download the sequence:
Link to NCBI Protein BLAST