Transcript Information: R_Transcript_109646.p1


Annotated TAIR IDAT5G40460.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16202465-16202803 | Forward length=112
E-Value5E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.78386948885295
Replicate 20
Replicate 32.2485141198677
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.55679787179101
Condition 3: 24 Hour
Replicate 11.126763544918
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_109646.p1 GENE.R_Transcript_109646~~R_Transcript_109646.p1 ORF type:complete len:163 (+),score=27.31 R_Transcript_109646:323-811(+)
ATGGGCGCCTCTTCCGAGGTCACCAATACTAATAATAATTCTGATAACAAGCTAATTCCCAAAGTCCAACCCCAAAGAGCAGGTGAATTCCGCCACAATGACAATACAGAAGAGAGCATAATTATTCCACGTCATGAAGGTGAAAGTGAAGGTGAAGGTGAAGATGAAGATCCTGTGAAGAAAGAAGATGAAGAAGCTAAAGTGATATCGGATGACGACGATGGGTTCAAGACACCAACATCAGCGGAACATAGAATCCCAACCAACCTGCCATGCCCACCGGCACCCAGAAAAACCATGCCCACGAAACGGCGTCGTTGCTCCACAATGCGGTTCGTTGAGGTTTCTTGTCGAGATCTTGAATTGTTATTTCCACCTCGCCCCATTCTTCTAGTTAGGGATAATACTGATACTAGTCTCCGTGATCGTCCTCATCATATCAAGAAAAAGGCCAACCTTACCACTTCTCTTTTCTCTAATTTTAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_109646.p1 GENE.R_Transcript_109646~~R_Transcript_109646.p1 ORF type:complete len:163 (+),score=27.31 R_Transcript_109646:323-811(+)
MGASSEVTNTNNNSDNKLIPKVQPQRAGEFRHNDNTEESIIIPRHEGESEGEGEDEDPVKKEDEEAKVISDDDDGFKTPTSAEHRIPTNLPCPPAPRKTMPTKRRRCSTMRFVEVSCRDLELLFPPRPILLVRDNTDTSLRDRPHHIKKKANLTTSLFSNFR*

Click here to download the sequence:
Link to NCBI Protein BLAST