Transcript Information: R_Transcript_110044.p1


Annotated TAIR IDAT1G03540.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:883782-885611 | Forward length=609
E-Value2.1E-228
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6505921909438
Replicate 22.615932510883
Replicate 32.5910899903845
Condition 2: 8 Hour
Replicate 11.605630488344
Replicate 22.7492887509654
Replicate 34.0171597274627
Condition 3: 24 Hour
Replicate 13.500124708486
Replicate 22.8563368071403
Replicate 34.1622520388198


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_110044.p1 GENE.R_Transcript_110044~~R_Transcript_110044.p1 ORF type:complete len:610 (+),score=102.31,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.5,PPR|PF01535.16|0.17,PPR|PF01535.16|0.063,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|14,PPR|PF01535.16|0.46,PPR|PF01535.16|0.00034,PPR|PF01535.16|92,PPR|PF01535.16|0.012,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|5.4,PPR|PF01535.16|0.015,PPR|PF01535.16|41,PPR_2|PF13041.2|9.8e+03,PPR_2|PF13041.2|8.6,PPR_2|PF13041.2|2.6e-05,PPR_2|PF13041.2|5.7,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|4.9e+02,PPR_2|PF13041.2|4.8e-05,PPR_2|PF13041.2|0.36,PPR_2|PF13041.2|5.5e-10,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|3.2,PPR_2|PF13041.2|8.2e+02,PPR_1|PF12854.3|6.2e+03,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.0024,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|8.3e+02,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|3.7,PPR_1|PF12854.3|78,PPR_1|PF12854.3|0.45,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.14,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|5.1e+03,PPR_3|PF13812.2|5.9e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|29,PPR_3|PF13812.2|8.9e+02,PPR_3|PF13812.2|5,PPR_3|PF13812.2|93,PPR_3|PF13812.2|4.1e+02,PPR_3|PF13812.2|0.039,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|31,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|3.8e+03 R_Transcript_110044:61-1890(+)
ATGAAGCTATTCATCAAACGTAATCACACCTCTCTGGGCTCCCTCTTTCCTAAACCCTTAAAACCCAGATCATCCCAAGTATCCCAAATCCTCACTTTCTGCAAATCAGTCTCGTTCTTTGAAGCTCTTAAACTTCTTAAAGTCACTGACCCAAGAACAATCAGCATAGATGTGAAGCCACTTGTATATGCTTCACTCTTACAAACAGCTACCAAAGTTCACTCCTTCAATCACGGCTTACAAATCCATTCTCATATCCTAAAATCTGGTCTCATTGCCAATAGCCTTGTCGGTAATAGCTTGTTATCCTTGTATTTCAAAGGTAGAAATTTAATTGGGGCAACTAAACTCTTTGACGAATTGACTACTAAGGATGTTATTTCTTGGACTTCCATGATATCTGGGTATGTTAGAGTGAACCCCAGCAAAGCTCTTGGTTTTTTCTGGGATATGTTGGATATTGGGATTGAGGCGAATGCCTTTTCTTTGTCATCAGGAATTAAGGCATGTTCTGAAATTGGGGATATAAAGCTTGGTCGATGCTTCCATGGGCTTGTATTAAGAGGTGGGCTTGAGCTGAATGTTGTGATTGGTAGCTCGCTCATTGATATGTATGGGAAGAATAATTGGTTGAACTATGCACGCCATGTGTTTGATCAAATGCCTGAACCAGACTCCGTTTGTTGGTCTTCAATCATTTCAGCCTTGACAAAGAACGATCTGTATGAAGAAGCATTGGCATTCTTTTACCTGATGCAGAGGAAATATAGATTGGTCGCGGATGAGTTTACTTATGGGTCAGTATTGACAGCATGTGGGAATCTCGGGAAGTTGAAGCAAGGGAAACAAGTACATGCCCGTGTCATTGCAACGGGACTTTGTGGAAATGTAGCAGTGGAGAGTAGCTTGGTAGATATGTATGGAAAATGTGGGAAAAGTGGAGACTCGCAGCTAGTCTTTGACAAAATGAGGATAAGAAATTCGGTATCTTGGTGTGCTTTGTTAAATGGGTACAGTCAGAATGAGGAATTTGAGTCCGTTATTGAGCTTTTCAGGATGATGGATGATCCTGATCTCTTTAGTTTTGGAACTCTTATTCGAGCCTGTGCACGACTAGCTGCTGTAAAACAAGGCAAAGAGGTTCATTGTCAGTATATGAGGAAGGGTGGCCATGGATATGTTATTGTTGAATCAGCTTTAGTTGATCTCTATGCAAAATGTGGTTATATTGACTATGCTGAGAAAGTTTTTATGCAGATGCCTGTAAGAAATTTGATCTCTTGGAACTCATTGATATGTGGTTTGGCCCAGAATGGAAGAGGTCTTGAAGCTGTCAAGCTATTTGATCAAATGGTCAAAGAGGGAAATAAGCCTGATTATATTAGTTTTGTTGGCGTTATCTTTGGCTGTAGTCATGCTGGTTTGGTTGATCAGGGACGTCAATATTTTATCTCAATGACTGAAGACTATGGAATTAAACCGGGTACTGAGCATTGTAATTGCATGGTTGATCTTCTAGGCCGAGCAGGATTGATTGAAGAAGCTGAAAATCTGATAGAGAAAGCTGAGTGTAAAGATTGCTCTTCTCTCTGGCCAGCTCTTCTTGGCGCTTGTGCAACAAGCGAAAATTCTGCTGCCATGGAGCGCATTGCACTGAAAATGATGGAACTAGAACCTGAAAACCACTTAAGTTATGTGCATCTGATCAATGATTACAAATATGGTGGTCGCTGGAATGATGCTACAAAGATAAGGAAGTTGATGGAAGGTCGAAGAGTTGTTAAATTGCCTGGTAGGAGTTGGGTTGAAAATGGCCTATTAAATAGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_110044.p1 GENE.R_Transcript_110044~~R_Transcript_110044.p1 ORF type:complete len:610 (+),score=102.31,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.5,PPR|PF01535.16|0.17,PPR|PF01535.16|0.063,PPR|PF01535.16|2.8e-05,PPR|PF01535.16|14,PPR|PF01535.16|0.46,PPR|PF01535.16|0.00034,PPR|PF01535.16|92,PPR|PF01535.16|0.012,PPR|PF01535.16|2.2e-08,PPR|PF01535.16|5.4,PPR|PF01535.16|0.015,PPR|PF01535.16|41,PPR_2|PF13041.2|9.8e+03,PPR_2|PF13041.2|8.6,PPR_2|PF13041.2|2.6e-05,PPR_2|PF13041.2|5.7,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|4.9e+02,PPR_2|PF13041.2|4.8e-05,PPR_2|PF13041.2|0.36,PPR_2|PF13041.2|5.5e-10,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|3.2,PPR_2|PF13041.2|8.2e+02,PPR_1|PF12854.3|6.2e+03,PPR_1|PF12854.3|1.6e+03,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.0024,PPR_1|PF12854.3|0.045,PPR_1|PF12854.3|8.3e+02,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|3.7,PPR_1|PF12854.3|78,PPR_1|PF12854.3|0.45,PPR_1|PF12854.3|1.5e-06,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|0.14,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|5.1e+03,PPR_3|PF13812.2|5.9e+03,PPR_3|PF13812.2|27,PPR_3|PF13812.2|29,PPR_3|PF13812.2|8.9e+02,PPR_3|PF13812.2|5,PPR_3|PF13812.2|93,PPR_3|PF13812.2|4.1e+02,PPR_3|PF13812.2|0.039,PPR_3|PF13812.2|4.4,PPR_3|PF13812.2|31,PPR_3|PF13812.2|2.8e+03,PPR_3|PF13812.2|3.8e+03 R_Transcript_110044:61-1890(+)
MKLFIKRNHTSLGSLFPKPLKPRSSQVSQILTFCKSVSFFEALKLLKVTDPRTISIDVKPLVYASLLQTATKVHSFNHGLQIHSHILKSGLIANSLVGNSLLSLYFKGRNLIGATKLFDELTTKDVISWTSMISGYVRVNPSKALGFFWDMLDIGIEANAFSLSSGIKACSEIGDIKLGRCFHGLVLRGGLELNVVIGSSLIDMYGKNNWLNYARHVFDQMPEPDSVCWSSIISALTKNDLYEEALAFFYLMQRKYRLVADEFTYGSVLTACGNLGKLKQGKQVHARVIATGLCGNVAVESSLVDMYGKCGKSGDSQLVFDKMRIRNSVSWCALLNGYSQNEEFESVIELFRMMDDPDLFSFGTLIRACARLAAVKQGKEVHCQYMRKGGHGYVIVESALVDLYAKCGYIDYAEKVFMQMPVRNLISWNSLICGLAQNGRGLEAVKLFDQMVKEGNKPDYISFVGVIFGCSHAGLVDQGRQYFISMTEDYGIKPGTEHCNCMVDLLGRAGLIEEAENLIEKAECKDCSSLWPALLGACATSENSAAMERIALKMMELEPENHLSYVHLINDYKYGGRWNDATKIRKLMEGRRVVKLPGRSWVENGLLNS*

Click here to download the sequence:
Link to NCBI Protein BLAST