Transcript Information: R_Transcript_110144.p1


Annotated TAIR IDAT1G06820.1
Annotated Gene Namecarotenoid isomerase
Annotated Gene Symbol(s)CRTISO, CCR2
Annotation TypeOrtholog
Chromosome Positionchr1:2093145-2096220 | Reverse length=595
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.5666140020025
Replicate 23.8087801060053
Replicate 34.6791201797019
Condition 2: 8 Hour
Replicate 13.8445794048266
Replicate 23.9881450844798
Replicate 35.3680067993218
Condition 3: 24 Hour
Replicate 15.3194919186144
Replicate 23.8663944701469
Replicate 36.6397152937387


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_110144.p1 GENE.R_Transcript_110144~~R_Transcript_110144.p1 ORF type:5prime_partial len:656 (+),score=138.27,Amino_oxidase|PF01593.20|2.1e-20,NAD_binding_8|PF13450.2|4.8e-12,FAD_binding_2|PF00890.20|7.2e-06,FAD_binding_2|PF00890.20|6.9,FAD_binding_2|PF00890.20|3.5e+02,DAO|PF01266.20|3.7e-05,DAO|PF01266.20|22,Pyr_redox_2|PF07992.10|0.00013,Pyr_redox_2|PF07992.10|18,Pyr_redox_2|PF07992.10|9.4e+02,GDI|PF00996.14|0.039,GDI|PF00996.14|0.033 R_Transcript_110144:1-1968(+)
ATCCAGAGTCTCCACTTAGTAATATGTGCAACGATTCTTGTTTTCCTTTCATCTCTCTCTCAACCTCTAAGATTCAACAATATGCAGTTCATCTCTACTTCCCCAATTGCTTCTCCATCTCTCAACTTCAATAATCTTGCTGTTCATCCCTTTTCTGAACAATTCAGACCAAGAAACAGTACCCAATTGGGTTTGCCTAAACCCATAAAGCAAAAACACAAGTGGGTTCTTTTTGGCTCACTGGAATTAGGGTTTTGTGACTCAAAGGGTTTAAGGCAATGTGAAAATCATAGAGTTGTTTCTAATGTAAATGGTGGGGATGATAGAAGGGATATGAGAATTGTGGGTAGGGCAGGAGCTGTGATGAGTGTAGATGAAACAGTGGGGAAAGGAAAGAGTGATGGGGAAAGTTATGATGCAATTGTCATTGGCTCTGGTATTGGTGGATTAGTTGCTGCAACTCAGCTTGCTGTTAAGGGAGCCAAGGTTTTGGTTTTGGAGAAGTATGTCATTCCTGGAGGAAGCTCTGGGTTTTACGAGAGGGATGGTTATACATTCGATGTTGGATCGTCTGTCATGTTCGGTTTCAGTGACAAGGGTAATCTGAACTTAATCACTCAAGCATTAGAGGCAGTGGGACATAGGATGCAAGTCATACCAGATCCAACCACTGTCCATTTTCACTTACCAAATAACATTTCTGTTCGAGTGCATAAGGAGTATGAGGACTTCATCGCAGAACTGACTTCTAAATTTCCCCATGAGAAAGAAGGCATTCTCAAATTTTATGGAGAGTGTTGGAAGATATTCAATGCCTTGAACTCATTGGAGCTCAAGTCACTTGAGGAACCACTCTATCTTTTTGGGCAGTTCTTTCAGAAGCCTCTTGAATGTTTGACGCTTGCGTACTATTTACCTCAAAATGCTGGAGCAATTGCTCGAAAGTATATTAAGGATCCTGAGTTATTGTCTTTCATAGATGCTGAGTGTTTCATTGTCAGCACTGTTAATGCTATGCAGACTCCTATGATCAATGCTAGTATGGTTCTATGTGATAGGCATTTTGGAGGGATCAACTATCCTATTGGCGGTGTTGGTGGGATTCCTAAATACCTTGCCCAAGGTTTGGTTGATCATGGGAGCAAAATACTTTACAAAGCTAATGTGACTAACATCATTATGGATCAAGGGAAAGCTGTTGGGGTGAAGCTGTCTGATGGAAGGAAATTTTATGCCAGAACCATCATATCAAATGCAACTAGATGGGATACTTTTGGAAAGCTTTTGAAAGATGAGAAGCTCCCGAAAGAAGAGGAAAATTTTCAGAAATTATATGTCAAGGCTCCATCCTTTCTTTCTATACACATGGGGGTCAAAGCTGAGGTCTTGCCGCCAGATACAGATTGCCACCATTTTATTCTGGAGACTGACTGGAATAATTTAGAAGAGCCTTATGGTAGTATATTTTTGAGCATTCCCACCGTACTTGATTCTTCATTGGCCCCTGAAGGACACCATATTCTCCACATATTTACAACGTCTTCTATTGATGACTGGCAGGGATTGTCTCCAGAAGACTACAGGACAAAGAAGGAACTTATAGCTGATGAAATCATAAGCAGATTAGAGAAGAAAATGTTTCCAGGGCTTAAATCTTCCATCATGCTTAAGGAGGTTGGGACTCCAAAAACACACAGGCGTTACTTGGCTCGTGATAATGGGACATACGGACCTATGCCGCGTGCAGTCTCAAAAGGCTTACTGGGGATGCCATTCAATACTACGGCTATAGATGGTCTCTACTGTGTTGGTGATAGCTGTTTTCCAGGACAAGGGGTCATAGCTGTGGCGTTTTCTGGAGTAATGTGTGCTCATCGGGTGGCTGCTGACATCGGGATTGAGAAATCTTCCCCTATATTGGATACTGCTCTCCTTCGGTTGCTTGGCTGGTTGAGGTCATTGGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_110144.p1 GENE.R_Transcript_110144~~R_Transcript_110144.p1 ORF type:5prime_partial len:656 (+),score=138.27,Amino_oxidase|PF01593.20|2.1e-20,NAD_binding_8|PF13450.2|4.8e-12,FAD_binding_2|PF00890.20|7.2e-06,FAD_binding_2|PF00890.20|6.9,FAD_binding_2|PF00890.20|3.5e+02,DAO|PF01266.20|3.7e-05,DAO|PF01266.20|22,Pyr_redox_2|PF07992.10|0.00013,Pyr_redox_2|PF07992.10|18,Pyr_redox_2|PF07992.10|9.4e+02,GDI|PF00996.14|0.039,GDI|PF00996.14|0.033 R_Transcript_110144:1-1968(+)
IQSLHLVICATILVFLSSLSQPLRFNNMQFISTSPIASPSLNFNNLAVHPFSEQFRPRNSTQLGLPKPIKQKHKWVLFGSLELGFCDSKGLRQCENHRVVSNVNGGDDRRDMRIVGRAGAVMSVDETVGKGKSDGESYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGFYERDGYTFDVGSSVMFGFSDKGNLNLITQALEAVGHRMQVIPDPTTVHFHLPNNISVRVHKEYEDFIAELTSKFPHEKEGILKFYGECWKIFNALNSLELKSLEEPLYLFGQFFQKPLECLTLAYYLPQNAGAIARKYIKDPELLSFIDAECFIVSTVNAMQTPMINASMVLCDRHFGGINYPIGGVGGIPKYLAQGLVDHGSKILYKANVTNIIMDQGKAVGVKLSDGRKFYARTIISNATRWDTFGKLLKDEKLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFILETDWNNLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSIDDWQGLSPEDYRTKKELIADEIISRLEKKMFPGLKSSIMLKEVGTPKTHRRYLARDNGTYGPMPRAVSKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGIEKSSPILDTALLRLLGWLRSLA*

Click here to download the sequence:
Link to NCBI Protein BLAST