Transcript Information: R_Transcript_110518.p1


Annotated TAIR IDAT5G53110.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21529022-21533008 | Forward length=382
E-Value2.5E-90
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0573709599154
Replicate 22.9919728093225
Replicate 34.0086790793267
Condition 2: 8 Hour
Replicate 13.0607331184057
Replicate 22.5155992071334
Replicate 32.5412254868542
Condition 3: 24 Hour
Replicate 14.3619833732638
Replicate 24.9072951031534
Replicate 33.6661905350553


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_110518.p1 GENE.R_Transcript_110518~~R_Transcript_110518.p1 ORF type:complete len:400 (+),score=42.20,zf-RING_2|PF13639.2|4e+03,zf-RING_2|PF13639.2|5.6e-12,WAK_assoc|PF14380.2|4.7e-08,zf-RING_11|PF17123.1|8.8e-08,zf-rbx1|PF12678.3|2.7e-07,zf-C3HC4_2|PF13923.2|4.2e+03,zf-C3HC4_2|PF13923.2|5.4e+03,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2e-06 R_Transcript_110518:110-1309(+)
ATGCATTGCTTCAAACAATCCAATCTTTTCCGTCTAATAATCATCCTGGTTTCACTAAGATACACCATAAGCTCTCATGATAAAGGCATAGGGGAGACCAACACTTGCCTTACACAAGTGTGTAGCTATGATGAACCAGCCTCTCGATATGTTCGATTCCCATTCCTGATCAAGAATGAATCCCTCCCAAACACAAACACTTGCGGGTATCCAGGTTTCGACTTGTTCTGTAATCAAGCTGATAAGCTCTTAGTTGACTTGCCTGATTCAGGGGTTTTCTCTGTAAAAGCCTTAGATTATGGTAACCAGGAGTTATGGCTCAATGATCCCGATAATTGCCTCGCGAAAAGGTTTCTTTCGTTGAATCTATCAAGTAGTTCTAGTTCTAGCAGTTCCCCTTTCGTTCCCTTCCGAGAGCGAGTTTATTGGTTGTATAATTGTTCTAATGATTATTTGAAGTCACTTGCTTATGTGAAGCCAATTAAGTGCCTTAGTGGTGCAAGTTATGGTGTTGTTGCTACTTCTTCTCAATCTCAGATAATAGGCAATAGCAATTTTTCCTCCCAGTGTGATGAATTAGGGCCTGTTCGAGTTCCTATTGGATCGAAATCAGAGAAGACGTACTCTTCAGATCTTAGTAGTGATATAAGCCTCACTTGGGTTCAACCTGATTGTGGAGAGTGCTTTCAGAAAGGAGGGCAGTGTGGATTCAAGAGCAGTTCAAGCTTGAAAATCGGATGTTTTCATGTTTCTCGCCATGGACTTGCAAGAAAGGCTATAGTGGCAATTGCACTAGCATTTGCAGCACCTTTGGGACTGCTATTTGTTTGCCTCATATACTTCATAGTCAAGACTATATGCTACAGGGCAAGAAGGACCAGAACTGCTGCAAGTATTGCACTTGCACCAGCAATTTCAGCAATACACAATCAGAGACTTGCTAACGGCCTAGACCCGTCGATAATTGAATCCTACCCCAAGGTGATCTTAGGTGAGAGCCGACGTCTACCAAAACCAGATGATAAAAGCTGTCCAATATGCTTGGGTGAGTACCAGCCTAAGGAGATTTTAAAGACATTACCAGAATGTAAACATTGTTTTCATGCTGAATGCATTGATGAATGGCTTCACTTGAATGCCTCATGTCCTGTTTGTAGAAATTCTCCTTCTCCAATGATGGAAAATACTGAGAGAGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_110518.p1 GENE.R_Transcript_110518~~R_Transcript_110518.p1 ORF type:complete len:400 (+),score=42.20,zf-RING_2|PF13639.2|4e+03,zf-RING_2|PF13639.2|5.6e-12,WAK_assoc|PF14380.2|4.7e-08,zf-RING_11|PF17123.1|8.8e-08,zf-rbx1|PF12678.3|2.7e-07,zf-C3HC4_2|PF13923.2|4.2e+03,zf-C3HC4_2|PF13923.2|5.4e+03,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|2e-06 R_Transcript_110518:110-1309(+)
MHCFKQSNLFRLIIILVSLRYTISSHDKGIGETNTCLTQVCSYDEPASRYVRFPFLIKNESLPNTNTCGYPGFDLFCNQADKLLVDLPDSGVFSVKALDYGNQELWLNDPDNCLAKRFLSLNLSSSSSSSSSPFVPFRERVYWLYNCSNDYLKSLAYVKPIKCLSGASYGVVATSSQSQIIGNSNFSSQCDELGPVRVPIGSKSEKTYSSDLSSDISLTWVQPDCGECFQKGGQCGFKSSSSLKIGCFHVSRHGLARKAIVAIALAFAAPLGLLFVCLIYFIVKTICYRARRTRTAASIALAPAISAIHNQRLANGLDPSIIESYPKVILGESRRLPKPDDKSCPICLGEYQPKEILKTLPECKHCFHAECIDEWLHLNASCPVCRNSPSPMMENTERA*

Click here to download the sequence:
Link to NCBI Protein BLAST