Transcript Information: R_Transcript_110713.p1


Annotated TAIR IDAT3G54020.1
Annotated Gene NameArabidopsis Inositol phosphorylceramide synthase 1
Annotated Gene Symbol(s)AtIPCS1
Annotation TypeOrtholog
Chromosome Positionchr3:20006098-20008020 | Forward length=305
E-Value7.7E-180
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 163.682552664241
Replicate 249.591261935637
Replicate 363.484387052194
Condition 2: 8 Hour
Replicate 148.893996989896
Replicate 257.996318934123
Replicate 373.067435767145
Condition 3: 24 Hour
Replicate 158.74283373184
Replicate 258.744007013315
Replicate 358.992575489447


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_110713.p1 GENE.R_Transcript_110713~~R_Transcript_110713.p1 ORF type:complete len:315 (+),score=47.52,PAP2_C|PF14360.2|1.7e+02,PAP2_C|PF14360.2|1.2e-23 R_Transcript_110713:788-1732(+)
ATGTCGCTTTACATAGGTCGCGAAGCTTCAAAGCTATGGAAGAGGTTCTGTGCAGAAGTATCCACGGAAATCAATCTTCTTGCAGAAAATTGGAAATACATTCTTGGAGGACTTATTTTTCAGTATATCCATGGATTGGCTGCTCGAGGTGTTCATTATATACATCGGCCTGGTCCAACACTTCAGGATGCTGGCTTCTTCCTGCTTCCCGAGCTTGGACAAGACAAGGCTTACATTAGTGAAACTGTTTTTACTTCCATCTTTATATCCTTTTTCGTGTGGACATTTCATCCGTTCATTCTCAAAAGTAAAAAGATCTACACAGTGCTGGTGTGGTGCAGGGTTCTTGCTTTTTTAGTTGCATCACAAATTCTTAGGATTATCACATTCTACTCTACTCAGCTTCCTGGTCCAAATTACCACTGCCGTGAGGGCTCAAAACTTGCTACTCTCCCTCCGCCACACAGTGCACTTGAGGTCCTTTTAATTAACTTCCCGCGAGGGGTACTTTATGGATGTGGTGACCTCATTTTTTCATCTCATATGATCTTTACACTGGTTTTCATCCGAACATATCACAAATATGGCACAAAGAGGTGGATTAAGCAATTGGGTTGGCTACTTGCTGTGGTCCAGAGCTTATTGATCATAGCTTCTCGGAAGCATTATTCAGTTGATGTGGTCGTAGCATGGTATACTGTCAATCTAGTTGTATTCTTTGTTGACAAGAAACTGCCAGAAATGCCTGACCGATCCAGCAGTGCTTCTCTTTTGCTTCCGCTGAGCAACAAAGAAAAGGATGGCAGGAACAAGGAGGAAAATCACAAGCTTTTGAATGGAACTTCGGGAGATCCCATGGATCGAAGGCAAAGAAATGGAATAAATGGCAAGATTTTGGAGGATGGACTTGCAGTGCACAGTGATGCTGCCATTAACGGTGTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_110713.p1 GENE.R_Transcript_110713~~R_Transcript_110713.p1 ORF type:complete len:315 (+),score=47.52,PAP2_C|PF14360.2|1.7e+02,PAP2_C|PF14360.2|1.2e-23 R_Transcript_110713:788-1732(+)
MSLYIGREASKLWKRFCAEVSTEINLLAENWKYILGGLIFQYIHGLAARGVHYIHRPGPTLQDAGFFLLPELGQDKAYISETVFTSIFISFFVWTFHPFILKSKKIYTVLVWCRVLAFLVASQILRIITFYSTQLPGPNYHCREGSKLATLPPPHSALEVLLINFPRGVLYGCGDLIFSSHMIFTLVFIRTYHKYGTKRWIKQLGWLLAVVQSLLIIASRKHYSVDVVVAWYTVNLVVFFVDKKLPEMPDRSSSASLLLPLSNKEKDGRNKEENHKLLNGTSGDPMDRRQRNGINGKILEDGLAVHSDAAINGV*

Click here to download the sequence:
Link to NCBI Protein BLAST