Transcript Information: R_Transcript_110914.p3


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value2E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.62403285315278
Replicate 20
Replicate 30.1957840820184
Condition 2: 8 Hour
Replicate 10.41856179397
Replicate 20.19111864821526
Replicate 30.31028394222884
Condition 3: 24 Hour
Replicate 10.98110287297881
Replicate 20.3770129724885
Replicate 31.3095207932332


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_110914.p3 GENE.R_Transcript_110914~~R_Transcript_110914.p3 ORF type:complete len:117 (-),score=18.72,SEO_N|PF14576.2|1.8e-27,SEO_N|PF14576.2|3.8e-10 R_Transcript_110914:2120-2470(-)
ATGACAAGCAAGCTGCTAAGTGGGACTGATGCACACCACACAACTCTCTCAGTGCTACGAATGTTGCCTGGCTTCACATGGGAAGTCAAGGTAGTCATGACATTGGCGGCATTCTCTTTAACTTATGGAGACTTCTGGCTACTTGTTCAAATTTACTCCACCAACCCTCTCGCAAAATCCATGGCGCTTATAAAGTGCTTGCCTGCAACTTATATCACGGATGAGGATCCTGAAGTTAAGGCTGCTCTTGGTCATTTTCCGATTGCTGTCTATTGGGTTATCAGAAGTGCTGTTGCTGCAGCTGCGCAGATTACAACCTTATATGAGAGAACATCCCTGTCACCGGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_110914.p3 GENE.R_Transcript_110914~~R_Transcript_110914.p3 ORF type:complete len:117 (-),score=18.72,SEO_N|PF14576.2|1.8e-27,SEO_N|PF14576.2|3.8e-10 R_Transcript_110914:2120-2470(-)
MTSKLLSGTDAHHTTLSVLRMLPGFTWEVKVVMTLAAFSLTYGDFWLLVQIYSTNPLAKSMALIKCLPATYITDEDPEVKAALGHFPIAVYWVIRSAVAAAAQITTLYERTSLSPD*

Click here to download the sequence:
Link to NCBI Protein BLAST