Transcript Information: R_Transcript_110972.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value1E-52
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9773509930678
Replicate 22.6803787765487
Replicate 33.5124784721906
Condition 2: 8 Hour
Replicate 12.946208254841
Replicate 23.6912680955735
Replicate 34.0618057514439
Condition 3: 24 Hour
Replicate 13.7729631834231
Replicate 23.2848257922136
Replicate 33.9022100065415


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_110972.p1 GENE.R_Transcript_110972~~R_Transcript_110972.p1 ORF type:complete len:1363 (+),score=198.12,RVT_1|PF00078.23|1.9e-37,RVT_3|PF13456.2|3.5e-20,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.8e+03,zf-RVT|PF13966.2|7.3e+03,zf-RVT|PF13966.2|1e-17,Exo_endo_phos|PF03372.19|1.4e-07 R_Transcript_110972:138-4226(+)
ATGAGTATCTTGAGCCTTAACTGTCGGGGGCTGGGCAACCCCCGCACAGTGGCTTTGCTCCGTGATTTGGTGCGGAGAGAGGCCCCGTCCATGATATTTCTAAGTGAAACAAAATTAAGTGGACGAGAGTTAGATAGGGTGAAGCTGAAGTTTAGTGATTTTAATGGTTTAAGTGTTGATAGTGCTGGGAGATCAGGTGGGCTAGCTCTATGGTGGCGGAGAGGGATGTCTGTTACTCTTTTGTCTATGTCCTTACACCATATTGACGTACTTGTAGAGGAAGGTTTAGGAGAGGTTGTGTGGCGTTTTACTGGGTTTTATGGGTGGCCGGAGGTTCATAATCGTCACTTGTCTTGGGATCTTCTTGAGTCTTTGGCTAGTGTTAGGAGTGAAGCCTGGTTATGTATGGGTGACTTTAATGAAATTCTTTTCCCGCACGAGATGTCAGGGAGAAATGACAGGGCAAGATGGCAGATGCAAAACTTTCGGGTGGCGATTGATCGATGTGGTTTTCGGGATGTCCGTTATGACGGATACCCGTTTACCTATGATAATGGGAGGGCCGGTGTTGAGAATACCCAATCCAGAATTGACAGGGCCTTAGCCTCAGATAGTTGGTTGGAACTGTTCCCCAGAGCTACACTGATTCATCTTGAACGGGAATGGTCGGACCATGCGCCAATAAAACTTGTGGTGGATAGAGGGGCCCCGAGACGACGAAAGAATAAACTCTTTAGGTTCGAGCAGCTGTGGACTGAGCATGAAAAATGTGAAGACACAATTAAGAAGGGTTGGAGTGCTGGCGGTGGGGGGGCGATGAGAAGGGTGAAACAATGTGCAGAGGTGCTGGAGGAGTGGAGTGCAGCTGAGTTTAGGGCCATTTTCCGTAGATTAAAGCAGATTAGAAGGAGAATCTCCAAGCTTAATGGTGCAAACTTATCTAGGGCCCAAATTGAGGAGAGGAAACGGCTTGTAGGTGAATTGGAGAAATATGTACGAGAGGAGGAGGCTTACTGGCGTCAGCGGTCCCGTATTTTGTGGCTCCATACAGGGGATAGGAATACTTCCTTCTTTCATAGACAGGCTTCAAATAGGAAAGCTAACAATTCTATCACAAAATTAAAAGAGGAAGGGGGAAGGCTGTGTTCTGGTGAAGGTGAAGTGTGTCAAGAGGCAACTAGATATTTGTCGACACTTTTCAGCTCGGATGAGGGACCCACATCTCATGAGGCTCTTCTCGGTTTGGAGGAACGAGTTACTGCGGACATGAACTCAAAGCTGCGCAAACCCTATACAAAGGAGGAGATCAAGGTGGCTCTTGGACAAATGCATCCGCTCAAGGCCCCTGGACCCGACGGTATGTGTCCTTTATTTTTTCAAATGTACTGGCATATTGTTGGTGACGAGGTTAATGACCTTGTGTTGGATTTCCTTAATAATGGAATTATGCCTGATGATCTTAACAATACCTTTCTTGTGTTAATCCCCAAGAAGAAAAACCCAGAAGTTATGACTGATTTTCGACCTATTAGTTTGTGTAATGTCATGTATAAGTTGATTTCGAAGGTTCTAGCTAATAGACTCAAATGTTTCCTATCGGATATAGTCTCCTTGAATCAAAGTGCTTTTACCCCTGGAAGATTGGTCACAGATAACATTCTTACAGCTTTTGAGACTTTTCATTATATGAAGTCTGAGAGGTCTAAAGAAGGTTATGCGGCGCTTAAATTGGACATGGCAAAAGCTTATGATAGAGTGGAATGGGACTTTCTGGAGCAGGTGCTTATCAGGATGGGTTTTGATGATTTGTGGACTAATCGAGTTATGATGTGTGTGAGATCGGTTTCTTTTTCTGTGCTTATTAATGGTACCCCAACAGAGTGTTTCCGACCTAAAAGGGGCCTCCGTCAAGGGGATCCGATTTCACCTTACCTTTTCCTTCTTGTCACTGAAGCATTGTCAGGTTTGTTTAGAAGAGCGGAGTTGCAGGGAGATCTTCATGGTGTTCGTATTTGCCCGGGTGCCCCAACAACTACACACCTTTTCTTCGCAGACGACAGCCTTCTTTTCTTCAAGGCTTCCCCATCTCAAGCTCATGCTATAAAGGCAATCCTTGGTATCTATGAGAAGGCTTCTGGTCAAAAAGTCAATTTTGCTAAGTCACAAATGTGGTTTAGTAATAGTGTGCGGGATAGTACGAGGACTGCTATTCTCCAGTATTTGAATGTCGAGGTGGTCCAGCAGTTTGATCGCTATCTAGGCCTCCCTCCAATGTTGGGTAGATCAAAGAAGAGCCTTTGTAGCCCTTTAAAGGATCGATTGTGGAAGAAGCTCCAAGGGTGGAAGGGGATGTTGTTGTCAAAAGCTGGTAGGGAGGTAATGATTAAGGCAGTGGCCCAAGCTCTTTCTACCTACGCGATGAGTATTTTTAAACTACCAACATCCTTTTGCAAGGAGGTGACCTCTATGGTGACTAATTTTTTCTGGGGACAGAGAAAGGAGGAGAGGAGGATTCATTGGCGTTCTTGGAAAAATTTGTGCAGGACCAAAATTAGGGGTGGGTTGGGTTTCCGTGATTTGAAGATGTTTAATTGGGCTTTATTGGGCAAGCAGGCATGGAGGCTGGCTCGGGGAGAGGGCGGACTGTTGGAACAAATTTTCAGAGCGAGGTATTATCCACAAGGGACTTTCCTCTCTAGTTCGCTGGGGGCACATCCTAGTTATACCTGGAGGTGTATATGGGAGGCTCGGTGGGTTGTGCTGAAAGGTATGCGTTGGCGTGTTGGGAATGGCCAGCAAATAAAAGTCTGGGGTGATGCTTGGCTGGATGGCAGCGGTTCGGGGAAAGTTATTAGCCCTCGAGGTGCTCATGCTCAGGATATGCGTGTCTCAGAGCTTTTGTGTGGAGTGACTGGTGAATGGGATATGGACAAAGTGCGAGATACTTTTCTTCATTTTGAGGTATCTCGGATTGCGTCTATACCTCTTAGCCCAAGGCTTCCCCCTGATTCTATTTACTGGAACTGGGATAAGAATGGACGTTATTCGGTGCGTAGTGCTTACCATGGGATAATGGCAGCGGCTGAGTCGAGTATGGAGGAGTCTTCCTCTCGCGAGAGTAATGGTTTGTGGGCTAAGCTATGGAGTGTGCAGGTACTTCCCCGAATTAAAATGTTCATGTGGCAAATGTGTCAAGAGAGATTACCTACTAAGGAGGGTCTACATAGAAGGGTGGCTTCAATTGACTCGACGTGTGGGGTGTGCAGACAGTCAAGCGAGGACACTCTTCATGCAGTTCGAGACTGTCCAAGAGCAACAGATGTTTGGACTAGCAGTGGGTTGGACGTGTTTTGTGGCACCCCTTTCCGATCAGTGCGTGATTGGGTGGAACGTGTGCAGGTTTTCTCACAGGGGCGTGAGCTAGAAATGTTTTGTTGTATTGCGTGGGCCATCTGGAATGGGAGGAATGCCTGCATTTTTCAAGGTGAAATGGAGCATGCTGGGGACATCTTATCTCGGGCCCTTCGAGTATGTGAAGAAGCTCAAAGTGATGCAGGGGACAGGGGGATTGCAAGAGTTGCTAGGCGGGATAAGTGGATGGCCCCTGGAAGTGGGGTGTGGAAAATTAATGTGGATGCTGGCTGTTTGGTGGGGTTCGGTGTTAGTGTCGGCATTATTTGCAGAAATGAGCGGGGACGTCCTATAGTTGGGGCAACTCACAATATTGAGGTGGAGTGGGATGCTCGATTAGCTGAAGCACAGGGAGTTCTTAAAGGGCTGCAGCTGGCATATGCGGTTGGCGGCACAAATATTATCCTTGAAACTGATTGTTTAAGTGTTTACTCTGCTCTTATGTCAAATAGCAAAGGCCTGTCTATCTTTGATCTGGTGTTAGACGATATTAGAGACTTTAGCTCAGTCTTTTCCAGTGTGTCGTGGTCTTTTGTTAATAGGGAAGGGAATAAAGTCGCCCATGAACTAGCGCATGTGTTTCCATGGGAAATTGGCGTTCGGATGTGGGATGTTTTTTTTCCCGCGAATGTTGTGTCTGTGTTGAATTCTGATTTTACAATTATGAATGAAAGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_110972.p1 GENE.R_Transcript_110972~~R_Transcript_110972.p1 ORF type:complete len:1363 (+),score=198.12,RVT_1|PF00078.23|1.9e-37,RVT_3|PF13456.2|3.5e-20,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.8e+03,zf-RVT|PF13966.2|7.3e+03,zf-RVT|PF13966.2|1e-17,Exo_endo_phos|PF03372.19|1.4e-07 R_Transcript_110972:138-4226(+)
MSILSLNCRGLGNPRTVALLRDLVRREAPSMIFLSETKLSGRELDRVKLKFSDFNGLSVDSAGRSGGLALWWRRGMSVTLLSMSLHHIDVLVEEGLGEVVWRFTGFYGWPEVHNRHLSWDLLESLASVRSEAWLCMGDFNEILFPHEMSGRNDRARWQMQNFRVAIDRCGFRDVRYDGYPFTYDNGRAGVENTQSRIDRALASDSWLELFPRATLIHLEREWSDHAPIKLVVDRGAPRRRKNKLFRFEQLWTEHEKCEDTIKKGWSAGGGGAMRRVKQCAEVLEEWSAAEFRAIFRRLKQIRRRISKLNGANLSRAQIEERKRLVGELEKYVREEEAYWRQRSRILWLHTGDRNTSFFHRQASNRKANNSITKLKEEGGRLCSGEGEVCQEATRYLSTLFSSDEGPTSHEALLGLEERVTADMNSKLRKPYTKEEIKVALGQMHPLKAPGPDGMCPLFFQMYWHIVGDEVNDLVLDFLNNGIMPDDLNNTFLVLIPKKKNPEVMTDFRPISLCNVMYKLISKVLANRLKCFLSDIVSLNQSAFTPGRLVTDNILTAFETFHYMKSERSKEGYAALKLDMAKAYDRVEWDFLEQVLIRMGFDDLWTNRVMMCVRSVSFSVLINGTPTECFRPKRGLRQGDPISPYLFLLVTEALSGLFRRAELQGDLHGVRICPGAPTTTHLFFADDSLLFFKASPSQAHAIKAILGIYEKASGQKVNFAKSQMWFSNSVRDSTRTAILQYLNVEVVQQFDRYLGLPPMLGRSKKSLCSPLKDRLWKKLQGWKGMLLSKAGREVMIKAVAQALSTYAMSIFKLPTSFCKEVTSMVTNFFWGQRKEERRIHWRSWKNLCRTKIRGGLGFRDLKMFNWALLGKQAWRLARGEGGLLEQIFRARYYPQGTFLSSSLGAHPSYTWRCIWEARWVVLKGMRWRVGNGQQIKVWGDAWLDGSGSGKVISPRGAHAQDMRVSELLCGVTGEWDMDKVRDTFLHFEVSRIASIPLSPRLPPDSIYWNWDKNGRYSVRSAYHGIMAAAESSMEESSSRESNGLWAKLWSVQVLPRIKMFMWQMCQERLPTKEGLHRRVASIDSTCGVCRQSSEDTLHAVRDCPRATDVWTSSGLDVFCGTPFRSVRDWVERVQVFSQGRELEMFCCIAWAIWNGRNACIFQGEMEHAGDILSRALRVCEEAQSDAGDRGIARVARRDKWMAPGSGVWKINVDAGCLVGFGVSVGIICRNERGRPIVGATHNIEVEWDARLAEAQGVLKGLQLAYAVGGTNIILETDCLSVYSALMSNSKGLSIFDLVLDDIRDFSSVFSSVSWSFVNREGNKVAHELAHVFPWEIGVRMWDVFFPANVVSVLNSDFTIMNES*

Click here to download the sequence:
Link to NCBI Protein BLAST